View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_22 (Length: 422)
Name: NF12595_low_22
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 21 - 412
Target Start/End: Original strand, 31998347 - 31998738
Alignment:
| Q |
21 |
agtgcttcgtcagttggtatccttaaaatcaatattgatgcaggctgttttgaggatcatttcacttgctggggttgaaagcgtggaatcatgaagggat |
120 |
Q |
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| T |
31998347 |
agtgcttcaccagttggtatccttaaaatcaatattcatgcaggctgttttgaggatcatttcacttgctggggttgaaagcgtggaatcatgaagggat |
31998446 |
T |
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| Q |
121 |
gctttctgcagctgcaacaaagagggagatgtgacaaaggctccagctttgccggacattatgggactgcgttggtgtctccggtggatgtctacacaaa |
220 |
Q |
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| T |
31998447 |
gctttctgcagctgcaacaaagagggagatgtgacaaaggctccagttttgccggacattatgggactgcgttggtgtctccggtggatgtctacacaaa |
31998546 |
T |
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| Q |
221 |
atatgccaaatgtttgtgaactgcgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtctgactgtcatgaattgttgttcagtatgtcta |
320 |
Q |
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| T |
31998547 |
atatgccaaatgtttgtgaactgcgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtttgactgtcatgaattgttgttcagtatgtcta |
31998646 |
T |
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| Q |
321 |
atgttagtttaatttatgttaagagatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctg |
412 |
Q |
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| T |
31998647 |
atgttagtttaatttatgttaagtgatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctg |
31998738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 42612827 - 42612936
Alignment:
| Q |
40 |
tccttaaaatcaatattgatgcaggctgttttgaggatcatttcacttgctgggg-ttgaaagcgtggaatcatgaagggatgctttctgcagctgcaac |
138 |
Q |
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| T |
42612827 |
tccttaaaattaatattgatgcaggttgttttgaggaacatttcacttgttggggattgattgtgaggaaccatgaagggttggtttctgcagctgcaac |
42612926 |
T |
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| Q |
139 |
aaagagggag |
148 |
Q |
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| T |
42612927 |
aaagagggag |
42612936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 398
Target Start/End: Original strand, 42613096 - 42613200
Alignment:
| Q |
289 |
tgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaagagatgtaacaatagagttgctcatagttttgtaggaattgctaga |
388 |
Q |
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| T |
42613096 |
tgactgacttgaattgatattcagtatgtctaatgttagtttatgtt----taagagatgtaacagtagagctgctcat-ggttggtaggaattgctaga |
42613190 |
T |
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| Q |
389 |
aattgtggta |
398 |
Q |
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| T |
42613191 |
aactgtggta |
42613200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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