View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_23 (Length: 421)
Name: NF12595_low_23
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 38670494 - 38670887
Alignment:
| Q |
18 |
acacatgtagtgcagttctgtagtaaagtgattcgttcatgcctccttcatgccaacaggtgcaaatctactaaggtgtagtttcaacttccacaggcct |
117 |
Q |
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| T |
38670494 |
acacatgtagtgcagttctgtagtaaagtgattcgttcatgcctccttcatgccaacaggtgcaaatctactaaggtgtggtttcaacttccacaggcct |
38670593 |
T |
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| Q |
118 |
cgcactcatctctgtttgtcaaagagcacaccatctgtgccatcttggtatcatcatcctcatcatctgcctccttcaccttaggttgatcctacattca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38670594 |
cgcactcatctctgtttgtcaaagagcacaccatctgtgccatcttggtatcatcatcctcatcatctgcctccttcaccttaggttgatcctacattca |
38670693 |
T |
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| Q |
218 |
---aacnnnnnnncatttaatatgaaaatgtacaaacgacaaatcacatgaacggaaagattgatcaaaacaaagtgcaattactttaatggcagaggta |
314 |
Q |
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| T |
38670694 |
cacaaaaaaaaaacatttaatatgaaaatgtacaaacgacaaatcacatgaacggaaagattgatcaaaacaaagtgcaattactttaatggcagaggta |
38670793 |
T |
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| Q |
315 |
tcaacagtgaacttgatggcatcacttgcagctcgggttcggaggtagtacatcccagtcttcaaaccctttcaaaacaaaatagagattgatg |
408 |
Q |
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| T |
38670794 |
tcaacagtgaacttgatggcatcacttgcagctcgggttcggaggtagtacatcccagtcttcaaaccctttcaaaacaaaatagagattgatg |
38670887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 64 - 394
Target Start/End: Original strand, 38668894 - 38669237
Alignment:
| Q |
64 |
ttcatgccaacaggtgcaaatctactaaggtgtagtttcaacttccacaggcctcgcactcatctctgtttgtcaaagagcacaccatctgtgccatctt |
163 |
Q |
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| T |
38668894 |
ttcatgccaaaaggtgcaaatctactaagctgtagtttaaacttccacaggccaaacactcgtctctgtttgtcaaagagcacaccatttgtgccatctt |
38668993 |
T |
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| Q |
164 |
ggtatcatcatcctcat-------------catctgcctccttcaccttaggttgatcctacattcaaacnnnnnnncatttaatatgaaaatgtacaaa |
250 |
Q |
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|||| |||||||||||| |||||||||||||||||||||| |||||||||||||| | | |||||||| |||||||||||| |
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| T |
38668994 |
ggtaccatcatcctcattctcagtatcatccatctgcctccttcaccttaggctgatcctacattcacaacaaaaaacgtttaatatcaaaatgtacaaa |
38669093 |
T |
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| Q |
251 |
cgacaaatcacatgaacggaaagattgatcaaaacaaagtgcaattactttaatggcagaggtatcaacagtgaacttgatggcatcacttgcagctcgg |
350 |
Q |
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| T |
38669094 |
caacaaatcacatgaatggaaagattgaccaaaacaaagtgtaattactttaatggtagaggtatcaacagtgaacttgatggcatcatttgcagctcag |
38669193 |
T |
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| Q |
351 |
gttcggaggtagtacatcccagtcttcaaaccctttcaaaacaa |
394 |
Q |
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|||| |||||||||||| |||||||| | |||||| ||||||| |
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| T |
38669194 |
gttcagaggtagtacattccagtctttagacccttcgaaaacaa |
38669237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 2059289 - 2059450
Alignment:
| Q |
19 |
cacatgtagtgcagttctgtagtaaagtgattcgttcatgcctccttcatgccaacaggtgcaaatctactaaggtgtagtttcaacttccacaggcctc |
118 |
Q |
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|||||||||||||||| || |||||||| ||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||| |||| | |
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| T |
2059289 |
cacatgtagtgcagttatgcagtaaagt-atttgttcatgcctcgttcaagccaacaggtggaaatctactaaggtgtagtttcaacttccgcaggacgt |
2059387 |
T |
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| Q |
119 |
gcactcatctctgtttgtcaaagagcacaccatctgtgccatcttggtatcatcatcctcatc |
181 |
Q |
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| T |
2059388 |
acactcatctctgtttgtcaaagagcacaccatctgtgccatcttggcatcatcatcctcatc |
2059450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 298 - 386
Target Start/End: Original strand, 2059486 - 2059574
Alignment:
| Q |
298 |
ctttaatggcagaggtatcaacagtgaacttgatggcatcacttgcagctcgggttcggaggtagtacatcccagtcttcaaacccttt |
386 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
2059486 |
ctttaatggcagacgtatcaacagtgaacttgatggcatcacttgcagctcgtgttcggagatagtacatcccagtcttcaaacccttt |
2059574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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