View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_24 (Length: 410)
Name: NF12595_low_24
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 4682376 - 4682728
Alignment:
| Q |
18 |
aacatctacatatcttctctctacatacctaataacggagtccnnnnnnntttg-ggtggccgctatcaaattaacactaacaatacacaga---tgagc |
113 |
Q |
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| T |
4682376 |
aacatctacatatcttctctctacatacctaatgacggagtccaaaaaattttgaggtggccgccatcaaattaacactaacaatacacagaatctgagc |
4682475 |
T |
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| Q |
114 |
atcacaaattcaattttacactaacataaatcaatgatataaacaaaattaacaccaacagtacacaatatatcaaatatgggcatcacattctcaagtt |
213 |
Q |
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| T |
4682476 |
atcacaaattcaattctacactaacataaatcaatgatgtaaacaaaattaacacca---gtacacaatatatcaaatatgggcatcacatgctcaag-- |
4682570 |
T |
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| Q |
214 |
ggtcggcggtgttaataagaaggacatcctacaatggatgaagctgcaaaactaagtaccaatttattacccacaaggggaaaagtggctttggtaattt |
313 |
Q |
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| T |
4682571 |
--------------ataagaaggacatcctacgatggatgatgctgcaaaactaagtaccaatttattacccacaaggggaaaagtggctttggtaattt |
4682656 |
T |
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| Q |
314 |
tcatagtaactgaagggcaatatggtatttccagcacatacattcttttaaaaat--aaataattgggatgt |
383 |
Q |
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| T |
4682657 |
tcatagtaactgaagggcaatatggtatttccagcacatatattcttttaaaaataaaaataattgggatgt |
4682728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 109 - 329
Target Start/End: Complemental strand, 38602910 - 38602700
Alignment:
| Q |
109 |
tgagcatcacaaattcaattttacactaacataaatcaatgatataaacaaaattaacaccaacagtacacaatatatcaaatatgggcatcacattctc |
208 |
Q |
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| T |
38602910 |
tgagcatcacaaattcaattttacactaacataaatcaatggtataaacaaaattaacaccaacagtacacaa-atatcaaatat--------cagtttc |
38602820 |
T |
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| Q |
209 |
aagttggtcggcggtgttaataagaaggacatcctacaatggatgaagctgcaaaactaagtaccaatttattacccacaaggggaaaagtggctttggt |
308 |
Q |
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|||||||||||| |||||||||||||||||||| | ||| |||||| ||| ||||||||||||||||||||||| |||||| ||||||| |||| ||||| |
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| T |
38602819 |
aagttggtcggcagtgttaataagaaggacatcatgcaaaggatgatgctccaaaactaagtaccaatttattatccacaa-gggaaaaatggcattggt |
38602721 |
T |
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| Q |
309 |
aattttcatagtaactgaagg |
329 |
Q |
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| T |
38602720 |
aattttcatagtaactaaagg |
38602700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 27644802 - 27644872
Alignment:
| Q |
218 |
ggcggtgttaataagaaggacatcctacaatggatgaagctgcaaaactaagtaccaatttattacccaca |
288 |
Q |
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| T |
27644802 |
ggcggtgttattaggaaggacatcctgcaatggttgatgctgcaaaactaaggaccagtttattatccaca |
27644872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 26063686 - 26063611
Alignment:
| Q |
88 |
ttaacactaacaatacacaga---tgagcatcacaaattcaattttacactaacataaatcaatgatataaacaaa |
160 |
Q |
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| T |
26063686 |
ttaacactaacagtacacaaaatatgagcatcacattttcaatttttcactaacaaaaaccaatgatataaacaaa |
26063611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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