View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12595_low_28 (Length: 372)

Name: NF12595_low_28
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12595_low_28
NF12595_low_28
[»] chr8 (23 HSPs)
chr8 (152-365)||(39108458-39108671)
chr8 (18-124)||(39108696-39108802)
chr8 (154-307)||(4993210-4993361)
chr8 (156-274)||(36434673-36434792)
chr8 (125-307)||(10361104-10361287)
chr8 (152-307)||(32062273-32062427)
chr8 (133-288)||(40740672-40740827)
chr8 (151-304)||(19174066-19174220)
chr8 (152-307)||(4989196-4989353)
chr8 (170-307)||(44976092-44976228)
chr8 (152-307)||(11007984-11008137)
chr8 (125-316)||(38666346-38666535)
chr8 (127-245)||(5957038-5957156)
chr8 (152-264)||(35878960-35879072)
chr8 (175-306)||(8669378-8669509)
chr8 (152-307)||(43027819-43027977)
chr8 (125-208)||(32268789-32268871)
chr8 (205-310)||(30203408-30203513)
chr8 (195-307)||(3727119-3727231)
chr8 (231-300)||(29005129-29005198)
chr8 (191-275)||(70720-70804)
chr8 (152-196)||(7668675-7668719)
chr8 (167-264)||(4810918-4811015)
[»] chr2 (20 HSPs)
chr2 (125-307)||(44966001-44966183)
chr2 (152-305)||(40711152-40711305)
chr2 (217-307)||(41542736-41542826)
chr2 (147-290)||(25220743-25220886)
chr2 (178-307)||(44022140-44022269)
chr2 (151-307)||(31663376-31663531)
chr2 (154-248)||(27269136-27269230)
chr2 (133-307)||(6461220-6461393)
chr2 (125-307)||(34929173-34929355)
chr2 (166-265)||(1278149-1278246)
chr2 (157-246)||(8996570-8996659)
chr2 (154-206)||(34242385-34242437)
chr2 (181-256)||(16721594-16721669)
chr2 (226-297)||(2080516-2080587)
chr2 (221-299)||(12972694-12972772)
chr2 (166-256)||(32644843-32644933)
chr2 (221-302)||(5559661-5559742)
chr2 (147-208)||(14839613-14839674)
chr2 (217-306)||(17696021-17696108)
chr2 (195-307)||(34242585-34242695)
[»] chr6 (20 HSPs)
chr6 (125-305)||(17515309-17515489)
chr6 (127-306)||(9429545-9429723)
chr6 (175-309)||(3337656-3337789)
chr6 (152-307)||(24547962-24548115)
chr6 (152-307)||(2359658-2359813)
chr6 (152-307)||(2616998-2617153)
chr6 (167-307)||(13243770-13243910)
chr6 (152-307)||(33755408-33755563)
chr6 (165-299)||(3159579-3159713)
chr6 (181-307)||(4844441-4844567)
chr6 (211-294)||(9318780-9318863)
chr6 (189-289)||(11842261-11842361)
chr6 (127-247)||(30323079-30323199)
chr6 (154-300)||(2557258-2557405)
chr6 (166-305)||(13656996-13657136)
chr6 (151-208)||(2615113-2615170)
chr6 (218-264)||(5051563-5051609)
chr6 (217-299)||(7509642-7509724)
chr6 (154-305)||(14571414-14571568)
chr6 (227-307)||(29680085-29680163)
[»] chr5 (33 HSPs)
chr5 (126-307)||(25983031-25983212)
chr5 (126-307)||(13951074-13951255)
chr5 (147-305)||(40298236-40298394)
chr5 (125-307)||(19961521-19961705)
chr5 (128-300)||(8233975-8234146)
chr5 (152-260)||(14309926-14310034)
chr5 (152-305)||(1860136-1860290)
chr5 (152-307)||(36527421-36527575)
chr5 (125-299)||(14575911-14576085)
chr5 (152-273)||(18334397-18334518)
chr5 (166-307)||(30685585-30685726)
chr5 (146-306)||(15591634-15591794)
chr5 (152-287)||(25693651-25693789)
chr5 (152-259)||(33208414-33208521)
chr5 (147-265)||(3938396-3938514)
chr5 (192-306)||(7406197-7406311)
chr5 (156-305)||(4746048-4746197)
chr5 (152-265)||(14622470-14622583)
chr5 (175-307)||(28574794-28574926)
chr5 (166-246)||(30721407-30721487)
chr5 (133-280)||(42179789-42179929)
chr5 (165-307)||(41816496-41816638)
chr5 (211-309)||(42011310-42011406)
chr5 (152-226)||(730782-730856)
chr5 (165-303)||(1352790-1352928)
chr5 (158-264)||(4702549-4702656)
chr5 (218-302)||(29429686-29429770)
chr5 (152-280)||(1355772-1355901)
chr5 (165-220)||(3257481-3257536)
chr5 (127-299)||(16843866-16844039)
chr5 (268-307)||(41318170-41318209)
chr5 (166-244)||(10083731-10083809)
chr5 (218-278)||(30784242-30784302)
[»] chr4 (36 HSPs)
chr4 (127-307)||(50328351-50328531)
chr4 (170-307)||(47388488-47388625)
chr4 (125-307)||(26740739-26740921)
chr4 (152-298)||(55322929-55323075)
chr4 (165-313)||(49250012-49250160)
chr4 (125-307)||(53133448-53133630)
chr4 (153-264)||(41236038-41236149)
chr4 (157-306)||(45891303-45891448)
chr4 (153-307)||(12799924-12800078)
chr4 (147-280)||(42674021-42674154)
chr4 (125-285)||(34118901-34119061)
chr4 (175-306)||(4442251-4442382)
chr4 (161-307)||(17340333-17340479)
chr4 (152-307)||(37056183-37056339)
chr4 (152-275)||(48622255-48622376)
chr4 (126-229)||(38354254-38354357)
chr4 (179-275)||(8171077-8171174)
chr4 (125-307)||(46393123-46393305)
chr4 (152-285)||(31204310-31204443)
chr4 (125-209)||(966672-966756)
chr4 (173-307)||(14593575-14593709)
chr4 (125-238)||(31216952-31217065)
chr4 (152-224)||(9319887-9319959)
chr4 (152-264)||(24453161-24453273)
chr4 (126-306)||(45088201-45088372)
chr4 (154-307)||(31861062-31861214)
chr4 (181-246)||(16067812-16067877)
chr4 (152-307)||(34291243-34291397)
chr4 (211-281)||(5807358-5807428)
chr4 (166-307)||(45219918-45220061)
chr4 (171-256)||(33176496-33176581)
chr4 (205-248)||(2805870-2805913)
chr4 (147-302)||(47732851-47733006)
chr4 (214-264)||(38354370-38354420)
chr4 (152-188)||(41763375-41763411)
chr4 (218-302)||(50685669-50685753)
[»] chr3 (26 HSPs)
chr3 (125-307)||(41519472-41519656)
chr3 (125-307)||(53287384-53287566)
chr3 (152-308)||(12789847-12790003)
chr3 (159-307)||(24657203-24657351)
chr3 (152-307)||(20379018-20379173)
chr3 (157-307)||(28554166-28554315)
chr3 (152-307)||(42791040-42791193)
chr3 (159-264)||(28392160-28392265)
chr3 (126-280)||(30732758-30732912)
chr3 (147-280)||(49447562-49447695)
chr3 (151-307)||(37700210-37700365)
chr3 (125-224)||(39990757-39990856)
chr3 (157-264)||(38627727-38627835)
chr3 (154-248)||(12931501-12931593)
chr3 (172-307)||(20796416-20796552)
chr3 (167-302)||(54465304-54465431)
chr3 (238-307)||(46750141-46750209)
chr3 (183-256)||(42760416-42760489)
chr3 (147-252)||(1246585-1246687)
chr3 (156-236)||(49230046-49230124)
chr3 (234-307)||(36771826-36771900)
chr3 (269-303)||(50360644-50360678)
chr3 (165-206)||(54241286-54241327)
chr3 (226-302)||(37311728-37311804)
chr3 (254-302)||(39095973-39096021)
chr3 (226-302)||(45054724-45054800)
[»] chr1 (23 HSPs)
chr1 (154-299)||(51295704-51295848)
chr1 (182-307)||(43949118-43949243)
chr1 (164-307)||(51050029-51050171)
chr1 (150-307)||(10881806-10881964)
chr1 (157-307)||(29587101-29587251)
chr1 (125-299)||(24466519-24466695)
chr1 (127-307)||(34710891-34711071)
chr1 (152-275)||(39275846-39275969)
chr1 (147-275)||(15279012-15279141)
chr1 (152-256)||(33828101-33828205)
chr1 (152-256)||(33839760-33839864)
chr1 (151-306)||(42549167-42549322)
chr1 (185-264)||(44595720-44595799)
chr1 (157-280)||(18023788-18023911)
chr1 (167-307)||(15401690-15401830)
chr1 (171-307)||(18436291-18436427)
chr1 (178-300)||(31262410-31262532)
chr1 (210-299)||(36313615-36313704)
chr1 (175-256)||(19569048-19569130)
chr1 (151-193)||(46587681-46587723)
chr1 (221-305)||(46587789-46587870)
chr1 (250-307)||(39412437-39412494)
chr1 (211-253)||(11248717-11248759)
[»] chr7 (28 HSPs)
chr7 (180-307)||(17354394-17354521)
chr7 (153-307)||(43251852-43252005)
chr7 (152-307)||(40019737-40019891)
chr7 (125-306)||(23358423-23358605)
chr7 (151-316)||(37828343-37828509)
chr7 (133-307)||(48633898-48634072)
chr7 (212-307)||(42306249-42306344)
chr7 (201-307)||(36827787-36827893)
chr7 (165-280)||(20009656-20009770)
chr7 (127-307)||(25971417-25971592)
chr7 (157-307)||(23363754-23363902)
chr7 (165-307)||(31289442-31289584)
chr7 (147-307)||(3767108-3767269)
chr7 (126-274)||(48046893-48047039)
chr7 (172-311)||(25594582-25594720)
chr7 (165-299)||(45671712-45671846)
chr7 (125-215)||(42306573-42306663)
chr7 (212-305)||(46479738-46479831)
chr7 (193-249)||(48339746-48339802)
chr7 (147-233)||(3398891-3398976)
chr7 (184-270)||(11885442-11885528)
chr7 (166-271)||(43951892-43951997)
chr7 (183-259)||(676267-676343)
chr7 (147-218)||(39983055-39983126)
chr7 (260-302)||(32546828-32546870)
chr7 (251-305)||(32903088-32903142)
chr7 (221-306)||(3622276-3622361)
chr7 (246-302)||(39983188-39983244)
[»] scaffold0006 (1 HSPs)
scaffold0006 (175-294)||(50593-50712)
[»] scaffold0050 (2 HSPs)
scaffold0050 (154-307)||(37198-37349)
scaffold0050 (182-224)||(37802-37844)
[»] scaffold0047 (1 HSPs)
scaffold0047 (125-264)||(66115-66254)
[»] scaffold0004 (1 HSPs)
scaffold0004 (152-244)||(122482-122574)
[»] scaffold0005 (1 HSPs)
scaffold0005 (173-307)||(223669-223803)
[»] scaffold0027 (1 HSPs)
scaffold0027 (176-244)||(16852-16920)
[»] scaffold0119 (1 HSPs)
scaffold0119 (166-265)||(22845-22942)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 39108671 - 39108458
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  39108671 acaagttaatgattcaaatataaaaataatttattggaatgtgtgcattgcatttaaactttaattttttaatcaattatatgcacaaaattttagagaa 39108572  T
Q  252 tatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactaccatatctttacattcaatcaatcatcgtaaacattacattcaatt 351  Q
    |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||||||    
T  39108571 tatttcttattttgagtttcttaacatgtgccctaaaggcacaagttaacactaccctatttttacatacaattaatcatcgtaaacattacattcaatt 39108472  T
Q  352 taattggacctatg 365  Q
    ||||||||||||||    
T  39108471 taattggacctatg 39108458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 39108802 - 39108696
Alignment:
Q  18 acacggtaatatcagcattagcatatgactctttatgaaaatgaaactcacttgtaaaaataatgaaactctttaaaaagatattaattaaaaagtgtga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39108802 acacggtaatatcagcattagcatatgactctttatgaaaatgaaactcacttgtaaaaaaaatgaaactctttaaaaagatattaattaaaaagtgtga 39108703  T
Q  118 catcttc 124  Q
    |||||||    
T  39108702 catcttc 39108696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 154 - 307
Target Start/End: Complemental strand, 4993361 - 4993210
Alignment:
Q  154 aagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaata 253  Q
    |||||||||||||||||||| |||||||  |||  ||| |||| ||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  4993361 aagttaatgattcaaatatagaaataat--atttgaatatgtgtattgcatttaatctttaactttttaatgaattaaatgcacaaaattttagagaata 4993264  T
Q  254 tttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |||||| ||||   |||||||| |||| |||||| |||||||||||||||||||    
T  4993263 tttcttcttttatatttcttaacatgtgccctaatggcacaagttaacactacc 4993210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 36434673 - 36434792
Alignment:
Q  156 gttaatgattcaaatataaaaataatttattgaaatgtgtgcattaca-tttaaactttaactttttaatcaattaaatgcacaaaattttagagaatat 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| ||||||| || |||| |||||||||||||||| |||||||    
T  36434673 gttaatgattcaaatataaaaataatttattgaaatgtgtgcattgcattttaatctttcacttttttataaattgaatgcacaaaattttaaagaatat 36434772  T
Q  255 ttcttattttgagtttctta 274  Q
    ||||| ||| ||||||||||    
T  36434773 ttcttctttcgagtttctta 36434792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 125 - 307
Target Start/End: Complemental strand, 10361287 - 10361104
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatata-aaaataatttattgaaatgtgtgcattacatttaaactttaactttttaa 223  Q
    ||||||| ||||||||| || ||||  |||||||||||||||||||||| |||| ||  ||||| | |||||| ||| |||||||  |||||||||||||    
T  10361287 ggaaatgttaacttgtgccctcaaggcacaagttaatgattcaaatatataaaaaaacatattggattgtgtgtattgcatttaatatttaactttttaa 10361188  T
Q  224 tcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||| |||||||||||||||  |||||||  |||||| |||||  |||||||| |||| || ||| |||||||||||||||||||    
T  10361187 tcatttaaatgcacaaaatcatagagaaagtttcttcttttggatttcttaacatgtgccttaaaggcacaagttaacactacc 10361104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 152 - 307
Target Start/End: Original strand, 32062273 - 32062427
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaa-ctttttaatcaattaaatgcacaaaattttagaga 250  Q
    |||||||||||| ||||||||| ||||| || |||| ||||||| |||||||||||| |||| | ||||||||| |||| |||||||||||||||| | |    
T  32062273 acaagttaatgaatcaaatatagaaatagtt-attggaatgtgtacattacatttaatcttttatctttttaatgaattgaatgcacaaaattttaaaaa 32062371  T
Q  251 atatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||||||||| ||||||||||||||| ||||  ||||||| ||||||||| |||||||    
T  32062372 atatttcttcttttgagtttcttaacatgt-tcctaaggtcacaagttagcactacc 32062427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 133 - 288
Target Start/End: Original strand, 40740672 - 40740827
Alignment:
Q  133 taacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaa 232  Q
    ||||||||| ||  |||||||||||||| || ||||||||| || || ||||||  ||||||| |||||||||||| ||||||||||||||| | || ||    
T  40740672 taacttgtgcccttaagatacaagttaaagaatcaaatatagaagtagtttattagaatgtgtacattacatttaatctttaactttttaatgatttgaa 40740771  T
Q  233 tgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaag 288  Q
    |||||||||||||||||||||||| || ||||  |||| |||| |||| |||||||    
T  40740772 tgcacaaaattttagagaatatttattcttttaggttttttaacatgtgccctaag 40740827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 151 - 304
Target Start/End: Original strand, 19174066 - 19174220
Alignment:
Q  151 tacaagttaatgattcaaatata-aaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagag 249  Q
    ||||||||||||||||||||||| |||| || |||||  |||||||||||| |||||||  |||||||||||||||| ||||||||| ||||||||| ||    
T  19174066 tacaagttaatgattcaaatatagaaaaaaaattatttgaatgtgtgcattgcatttaatatttaactttttaatcatttaaatgcataaaattttaaag 19174165  T
Q  250 aatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacact 304  Q
    ||| |||||| ||||  |||| |||| ||||   |||| ||||||||||||||||    
T  19174166 aatgtttcttcttttaggttttttaacatgtgttctaaaggcacaagttaacact 19174220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 152 - 307
Target Start/End: Complemental strand, 4989353 - 4989196
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||| | ||||||||| ||||||||||||| |||||||| ||||||||||| ||||| ||||||||| |||  |||||||||||||||||||||    
T  4989353 acaagttaattaatcaaatatagaaataatttattgtaatgtgtgtattacatttaatctttagctttttaataaatagaatgcacaaaattttagagaa 4989254  T
Q  252 tatttcttat--tttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    | ||| || |  ||| | |||||||| ||||  | |||  ||||||||||||||||||    
T  4989253 ttttttttttcttttaaatttcttaacatgtgtcataaaagcacaagttaacactacc 4989196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 44976228 - 44976092
Alignment:
Q  170 tataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtt 269  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||| |||||| | ||||||| ||||| ||||||||||||||||| || |||||  ||    
T  44976228 tataaaaataatttattgaaaagtgtgcatta-atttaatctttaattttttattgaattaaacgcacataattttagagaatattttttcttttggatt 44976130  T
Q  270 tcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |||||  ||||  | ||| | |||||||||||||||||    
T  44976129 tcttagcatgtgtcttaaagacacaagttaacactacc 44976092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 307
Target Start/End: Complemental strand, 11008137 - 11007984
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||||| |||||||  || ||||||||||||||||||||||  ||||||  ||| |||||||||||| ||||||||||||||| ||||| ||    
T  11008137 acaagttaatgatttaaatataggaaaaatttattgaaatgtgtgcattgaatttaatatttcactttttaatcatttaaatgcacaaaatgttagataa 11008038  T
Q  252 tatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
      |||||| ||||  |  |||||| | |||| || | |||||||||||||||||||    
T  11008037 agtttcttcttttagg--tcttaacacgtactctcaaggcacaagttaacactacc 11007984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 125 - 316
Target Start/End: Original strand, 38666346 - 38666535
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| ||||||||||||  |||  ||||||| |  | |||||| |||||||||| ||||| |||  |||||||| |||||| |||||| | ||||||    
T  38666346 ggaaatgttaacttgtgtccttaaggcacaagtttaaaagtcaaatgtaaaaataatgtattggaatacgtgcattaaatttaatctttaa-tgtttaat 38666444  T
Q  225 caattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactaccatatcttta 316  Q
     | || |||||||||| ||| ||||||| ||| |||||||   |||||||| ||||  ||||||||||||||||||||||||||||| ||||    
T  38666445 gacttgaatgcacaaagtttaagagaattttt-ttattttttatttcttaacatgtgtcctaagggcacaagttaacactaccatatattta 38666535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 127 - 245
Target Start/End: Complemental strand, 5957156 - 5957038
Alignment:
Q  127 aaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatca 226  Q
    ||||| |||||||||| |  ||| ||||||||||||| ||||   || ||||||||||||| |||||| ||||| ||| ||| ||||||||||||||| |    
T  5957156 aaatgttaacttgtgttcttaaggtacaagttaatgaatcaatagtagaaataatttattggaatgtgcgcatttcatataatctttaactttttaatga 5957057  T
Q  227 attaaatgcacaaaatttt 245  Q
    ||| |||||||||||||||    
T  5957056 attgaatgcacaaaatttt 5957038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 35878960 - 35879072
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||| | |||||||||  ||| | |||||||||| ||||||||| |||||| ||||||||||| ||| | || |||||| ||||||| ||||||    
T  35878960 acaagttaataaatcaaatatatgaatgagttattgaaatatgtgcattaaatttaatctttaacttttcaatgatttgaatgcataaaatttaagagaa 35879059  T
Q  252 tatttcttatttt 264  Q
    |||||| ||||||    
T  35879060 tatttcatatttt 35879072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 306
Target Start/End: Complemental strand, 8669509 - 8669378
Alignment:
Q  175 aaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttctta 274  Q
    ||||| || |||| ||||||||||||  ||||||  ||||| |||||||| |||| ||| ||||||| |||| ||||||||| | ||||||| |||||||    
T  8669509 aaatagttgattggaatgtgtgcatttgatttaatatttaattttttaatgaattgaatacacaaaagtttaaagaatatttttaattttgaatttctta 8669410  T
Q  275 atatgtaccctaagggcacaagttaacactac 306  Q
    | ||||  |||||| |||||||||| ||||||    
T  8669409 acatgtgtcctaagagcacaagttagcactac 8669378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 307
Target Start/End: Complemental strand, 43027977 - 43027819
Alignment:
Q  152 acaagttaatgattcaaatataaaaataattta---ttgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttaga 248  Q
    |||||||||| ||| ||||||| |||||| |||   ||  ||| ||||||| | ||||||  |||||||||||||| |||| |||||| ||||||||| |    
T  43027977 acaagttaattatttaaatatagaaataacttactattagaatttgtgcatcatatttaatatttaactttttaataaattgaatgcataaaattttaaa 43027878  T
Q  249 gaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     | ||||| || ||||||||||||||| |||| |  |||| ||||||||||||| ||||    
T  43027877 aattattttttcttttgagtttcttaacatgtgcaataagagcacaagttaacattacc 43027819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 32268789 - 32268871
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaa 208  Q
    ||||||| |||||||||||| | ||  |||| ||||||||| |||||||||||||||||||| |||| ||| ||||||||||||    
T  32268789 ggaaatgctaacttgtgtcctccagc-acaaattaatgatttaaatataaaaataatttattaaaatatgttcattacatttaa 32268871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 30203408 - 30203513
Alignment:
Q  205 ttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacact 304  Q
    |||| ||||||||||||||| | || ||||||||||||||||||||||||||| | ||||  |||  |||| ||||  | |||| ||| |||||||||||    
T  30203408 ttaatctttaactttttaatgagttgaatgcacaaaattttagagaatatttcattttttaggttctttaacatgtgtcttaagagcataagttaacact 30203507  T
Q  305 accata 310  Q
    | ||||    
T  30203508 atcata 30203513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 307
Target Start/End: Complemental strand, 3727231 - 3727119
Alignment:
Q  195 tgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcaca 294  Q
    |||||||  ||||| ||||| ||||||||| |||| |||||||||||||||| | ||||||  || ||||  |||| |||| |||| | ||||| ||| |    
T  3727231 tgcattatttttaatctttagctttttaatgaattgaatgcacaaaattttataaaatattcattcttttaggttttttaacatgtgctctaagagcaga 3727132  T
Q  295 agttaacactacc 307  Q
    |||||||||||||    
T  3727131 agttaacactacc 3727119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 29005198 - 29005129
Alignment:
Q  231 aatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaa 300  Q
    ||||||||||| || ||| |||||||||  |||| |||||||||| ||||||||||| |||| |||||||    
T  29005198 aatgcacaaaacttgagaaaatatttctattttttagtttcttaacatgtaccctaaaggcagaagttaa 29005129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 275
Target Start/End: Complemental strand, 70804 - 70720
Alignment:
Q  191 tgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaa 275  Q
    ||||||||||| ||||||  |  | ||||||||| |||| ||| |||||||||| || ||||||||||| |||||| ||||||||    
T  70804 tgtgtgcattaaatttaatttcgacctttttaataaatttaatacacaaaatttaagggaatatttcttcttttgaatttcttaa 70720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 7668675 - 7668719
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtg 196  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||    
T  7668675 acaagttaatgattcaaatatagaaataacttattgaaatatgtg 7668719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 264
Target Start/End: Original strand, 4810918 - 4811015
Alignment:
Q  167 aaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttatttt 264  Q
    |||||||  |||| ||||||||||| |||| | || |||||| ||| || |||||||| |||| | || ||| ||||||||||||||| |||| ||||    
T  4810918 aaatataggaatagtttattgaaatatgtgaaatatatttaatcttaaaatttttaattaattgattgtacacaattttagagaatatatcttttttt 4811015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 125 - 307
Target Start/End: Complemental strand, 44966183 - 44966001
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| ||||||||| ||  |||  |||||||||||||||||||||| || |||||||||| |||||||||||| ||||||| |||||||||||||||    
T  44966183 ggaaatgttaacttgtgcccttaaggcacaagttaatgattcaaatatagaattaatttattggaatgtgtgcattgcatttaatctttaactttttaat 44966084  T
Q  225 caattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     |||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||||||| ||||||||||||||||||    
T  44966083 gaattgaatgcacaaaattttagagaatatttcttcttttgggtttcttaacatgtgccctaagagcacaagttaacactacc 44966001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 152 - 305
Target Start/End: Complemental strand, 40711305 - 40711152
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||| |||  ||||||  |||||||||||||| ||||||||||||||||||||| | ||    
T  40711305 acaagttcatgattcaaatataaaaattatttattgaaatgtgtgtattgtatttaatttttaactttttaatgaattaaatgcacaaaattttatacaa 40711206  T
Q  252 tatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacacta 305  Q
    |||||||| ||||| ||||||||| |||| ||| ||  ||||| ||||||||||    
T  40711205 tatttcttcttttgtgtttcttaacatgtgcccaaaaagcacatgttaacacta 40711152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 41542826 - 41542736
Alignment:
Q  217 tttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || |||||||||||||||||||||||    
T  41542826 tttttaatcaattaaatgcacaaaattttagagaatatttcttcttttgagtttcttaacatgtgccttaagggcacaagttaacactacc 41542736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 147 - 290
Target Start/End: Original strand, 25220743 - 25220886
Alignment:
Q  147 aagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaatttta 246  Q
    |||| |||||||||| ||| ||||||| ||||||||||||||||| |||| ||| | ||||| |||||| ||||||||||||||||| || |||||||||    
T  25220743 aagacacaagttaattatttaaatatagaaataatttattgaaatttgtgtattgcttttaatctttaattttttaatcaattaaattcataaaatttta 25220842  T
Q  247 gagaatatttcttattttgagtttcttaatatgtaccctaaggg 290  Q
    || ||| |||||| |||||| ||| |||| |||| |||||||||    
T  25220843 gaaaatgtttcttcttttgaattttttaacatgtgccctaaggg 25220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 307
Target Start/End: Complemental strand, 44022269 - 44022140
Alignment:
Q  178 taatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaata 277  Q
    ||||||||||||||| |||| ||||||||||  |||||||||||||| |||| ||||||||||||||||| ||||||| ||| ||||  ||||||||  |    
T  44022269 taatttattgaaatgcgtgccttacatttaatttttaactttttaattaattgaatgcacaaaattttagggaatattacttcttttaggtttcttatca 44022170  T
Q  278 tgtaccctaagggcacaagttaacactacc 307  Q
    ||| || ||||||||||| |||||| ||||    
T  44022169 tgtgccataagggcacaaattaacattacc 44022140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 151 - 307
Target Start/End: Complemental strand, 31663531 - 31663376
Alignment:
Q  151 tacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagaga 250  Q
    ||||||||||| |  |||||||| ||||| ||||||| ||||||||||||| ||||||  |||||||||| ||| |||| ||||||||| |||||| |||    
T  31663531 tacaagttaattaaacaaatatataaatagtttattggaatgtgtgcattatatttaat-tttaacttttgaatgaattgaatgcacaatattttaaaga 31663433  T
Q  251 atatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |||||| || |||| | |||||||| ||||  ||| | |||||||||||||||||||    
T  31663432 atattttttcttttaaatttcttaacatgtgtccttaaggcacaagttaacactacc 31663376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 27269230 - 27269136
Alignment:
Q  154 aagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttaga 248  Q
    |||||||||| ||||   || |||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  27269230 aagttaatgaatcaatggtataaataatttattgaaatgtgtgcatttcatttaacctttaactttttaatgaattagatgcacaaaattttaga 27269136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 307
Target Start/End: Complemental strand, 6461393 - 6461220
Alignment:
Q  133 taacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaa 232  Q
    |||||||| |||  |||| |||||||||||  | ||||||| ||||  |||||| ||||  ||| || |||||||| ||||||||||||||| |||| ||    
T  6461393 taacttgtatccttaagacacaagttaatgcattaaatatagaaattgtttatt-aaatacgtgtatcacatttaatctttaactttttaatgaattgaa 6461295  T
Q  233 tgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    || | |||||||| ||||||||||||| |||||||||| |||| ||||  |||||  | ||||||||||||||||    
T  6461294 tgtataaaattttggagaatatttcttcttttgagttttttaacatgtgtcctaaaagtacaagttaacactacc 6461220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 307
Target Start/End: Complemental strand, 34929355 - 34929173
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| ||||||||| ||  |||  ||||||| || |  ||||| || ||||||| ||||| |||| |||||||| |||||| ||||||  |||||||    
T  34929355 ggaaatgttaacttgtgcccttaaggcacaagtttataagccaaatgtagaaataatgtattggaatgcgtgcattaaatttaatctttaatgttttaat 34929256  T
Q  225 caattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     |||| |||||||||| ||| ||  |||||| ||| || ||  |||||||| |||| ||||||||||| ||||||||||||||    
T  34929255 gaattgaatgcacaaagtttaaggaaatattcctttttctggatttcttaacatgtgccctaagggcataagttaacactacc 34929173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 1278149 - 1278246
Alignment:
Q  166 caaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttg 265  Q
    |||||||| ||||||||||||| || ||| |||| |||||||| ||||||||||||||| ||||   |||||||||||||| | |||||||||| |||||    
T  1278149 caaatatataaataatttattggaacgtgcgcat-acatttaatctttaactttttaataaatt-tttgcacaaaattttataaaatatttctttttttg 1278246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 8996659 - 8996570
Alignment:
Q  157 ttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaatttta 246  Q
    |||||||  |||||||| ||||| || ||| ||||||||||||| |||||||  |||| ||||||||| | || ||||||||||||||||    
T  8996659 ttaatgaaacaaatatagaaatagttcattaaaatgtgtgcattccatttaatgtttagctttttaatgagttgaatgcacaaaatttta 8996570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 34242385 - 34242437
Alignment:
Q  154 aagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacattt 206  Q
    |||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||    
T  34242385 aagttaatgaatcaaatatataaataatttattggaatgtatgcattacattt 34242437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 16721594 - 16721669
Alignment:
Q  181 tttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatattt 256  Q
    ||||||| |||||||  |||| ||||||  ||||| ||| |||| ||||||||||||||||||| |||||||||||    
T  16721594 tttattggaatgtgttgattaaatttaatttttaagtttgtaataaattaaatgcacaaaatttgagagaatattt 16721669  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 2080587 - 2080516
Alignment:
Q  226 aattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagt 297  Q
    |||| |||||||||||||| ||||||||||| |  ||||| ||||||||| |||| |||| || ||||||||    
T  2080587 aattgaatgcacaaaatttaagagaatatttttgcttttgggtttcttaacatgtgcccttagcgcacaagt 2080516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 12972772 - 12972694
Alignment:
Q  221 taatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagtta 299  Q
    |||| |||| |||||||||||||| |||||||| ||||  |||||  || ||||| |||| ||||||| ||||||||||    
T  12972772 taataaattgaatgcacaaaatttcagagaataattctacttttggattgcttaacatgtgccctaagagcacaagtta 12972694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 32644933 - 32644843
Alignment:
Q  166 caaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatattt 256  Q
    |||||||||||||||| ||||| ||||  |||||||   |||| ||||||  ||||||| |||| |||||| ||||||| || ||||||||    
T  32644933 caaatataaaaataatgtattggaatgcatgcattaagcttaatctttaatgttttaatgaattgaatgcagaaaatttaagggaatattt 32644843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 5559661 - 5559742
Alignment:
Q  221 taatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaaca 302  Q
    |||| ||||||||||||||| ||| ||||| |||||||  || || ||| ||||| |||| |||| || |||||||||||||    
T  5559661 taattaattaaatgcacaaattttaagagactatttctatttctgtgttgcttaacatgtgcccttagagcacaagttaaca 5559742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 14839613 - 14839674
Alignment:
Q  147 aagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaa 208  Q
    ||||||||||||||| | ||||||||||||||||| |||| || | |||| |||| ||||||    
T  14839613 aagatacaagttaataactcaaatataaaaataatgtattaaattatgtgaattaaatttaa 14839674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 306
Target Start/End: Complemental strand, 17696108 - 17696021
Alignment:
Q  217 tttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactac 306  Q
    |||||||| |||| |||||||||| ||| || ||||||||||| |||||  |||||||| |||| || |||  |||||||||||||||||    
T  17696108 tttttaatgaattgaatgcacaaagtttaagggaatatttctt-ttttggatttcttaacatgtgccttaa-agcacaagttaacactac 17696021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 34242585 - 34242695
Alignment:
Q  195 tgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcaca 294  Q
    |||||||||||||| ||||||| ||||||| ||| ||||||| ||||   |||| |||||||||| |||| | ||||||||| |||   ||||   ||||    
T  34242585 tgcattacatttaatctttaacattttaatgaataaaatgca-aaaaaaatagaaaatatttcttctttt-aatttcttaatgtgtgttctaaaaacaca 34242682  T
Q  295 agttaacactacc 307  Q
    |||||||||||||    
T  34242683 agttaacactacc 34242695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 125 - 305
Target Start/End: Complemental strand, 17515489 - 17515309
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| ||||||||| || |||||||||| ||||||||||||||||  ||||||||||||||||| |||| ||| ||||||| |||||||||||||||    
T  17515489 ggaaatgttaacttgtgccctcaagatacaatttaatgattcaaatatgtaaataatttattgaaatatgtgtattgcatttaatctttaactttttaat 17515390  T
Q  225 caattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacacta 305  Q
    |||||||||| |||||||||||||||||||||||| ||||  ||||||||| |  |  |||| || |||||||||||||||    
T  17515389 caattaaatgtacaaaattttagagaatatttcttcttttaggtttcttaacaaatgtcctagggacacaagttaacacta 17515309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 127 - 306
Target Start/End: Complemental strand, 9429723 - 9429545
Alignment:
Q  127 aaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatca 226  Q
    ||||| ||||||||| || ||||  |||||||||||||| ||||||  |||||||| ||||||||||||||||| ||||||| |||||| ||||||||||    
T  9429723 aaatgttaacttgtgccctcaagc-acaagttaatgatttaaatatggaaataattcattgaaatgtgtgcattgcatttaatctttaattttttaatca 9429625  T
Q  227 attaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactac 306  Q
    |||||||||| ||||||||||| |||||||||| ||| | | |||||||||||| || ||| ||||||||||||||||||    
T  9429624 attaaatgcataaaattttagaaaatatttcttctttcgggcttcttaatatgtgccttaaaggcacaagttaacactac 9429545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 175 - 309
Target Start/End: Original strand, 3337656 - 3337789
Alignment:
Q  175 aaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttctta 274  Q
    ||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||||| |||| | |||||||    
T  3337656 aaataatttattggaatgtgtgcattgcatttaatcgttaactttttaatcaattaaatgcataaaattttagagaataattcttcttttaaatttctta 3337755  T
Q  275 atatgtaccctaagggcacaagttaacactaccat 309  Q
    | ||||  |||||| ||||||||||||||||||||    
T  3337756 acatgt-gcctaagcgcacaagttaacactaccat 3337789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 152 - 307
Target Start/End: Complemental strand, 24548115 - 24547962
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||| ||||| |||||||||||  || ||||||||||  |||||||||||||||| ||||||||||||||| |||| |||||||| ||||||||||||    
T  24548115 acaagtgaatgaatcaaatataaa--tagtttattgaaaaatgtgcattacatttaatctttaactttttaatgaattgaatgcacataattttagagaa 24548018  T
Q  252 tatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||||| || ||||  ||||||||| ||||||| |||  ||||||||||||||||||    
T  24548017 tattttttcttttatgtttcttaacatgtaccttaaaagcacaagttaacactacc 24547962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 307
Target Start/End: Original strand, 2359658 - 2359813
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||| |||||||||||| |||| |||||||||||||||| ||||||||||||||||| | ||||||||||| ||||||||| |||||||||| || ||||    
T  2359658 acaaattaatgattcaagtatagaaataatttattgaaaagtgtgcattacatttaatcgttaactttttattcaattaaaagcacaaaattctaaagaa 2359757  T
Q  252 tatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||||| || ||||   ||| |||| |||| | |||||  |||||||||||||||||    
T  2359758 tattttttcttttagattttttaacatgtgctctaagaacacaagttaacactacc 2359813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 307
Target Start/End: Original strand, 2616998 - 2617153
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||| ||||||||||||||| |||||||  |||| |||||||||||||| ||||||| |||||||  ||| |||||| ||||||||||||||    
T  2616998 acaagttaatgaatcaaatataaaaatagtttattgggatgtatgcattacatttaacctttaacgttttaatgtattgaatgcataaaattttagagaa 2617097  T
Q  252 tatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||||| || ||||   ||| |||| |||| || ||||| |||||||||||||||||    
T  2617098 tatttattcttttagattttttaacatgtgccataaggacacaagttaacactacc 2617153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 307
Target Start/End: Original strand, 13243770 - 13243910
Alignment:
Q  167 aaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttga 266  Q
    |||| |||||||||| ||||| ||||||||||||| ||||||  |||||  ||||||| |||| |||| ||||| ||| ||| |||||||||| |||||     
T  13243770 aaatgtaaaaataatgtattggaatgtgtgcattaaatttaatttttaatgttttaatgaattgaatgtacaaagtttaagaaaatatttctttttttgg 13243869  T
Q  267 gtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     |||||||| |||| ||||||||||||||||||| ||||||    
T  13243870 atttcttaacatgtgccctaagggcacaagttaatactacc 13243910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 307
Target Start/End: Complemental strand, 33755563 - 33755408
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    ||||||| |||| |||| |||| ||| | ||||||||||||| || |||||||||||  ||||| |||||||| |||| ||||  ||||||||||| |||    
T  33755563 acaagtttatgaatcaattatagaaacattttattgaaatgtttgtattacatttaatttttaattttttaataaattgaatgggcaaaattttagggaa 33755464  T
Q  252 tatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||| |||| ||||| ||||||||| || | | |||| |||||||||||||||||||    
T  33755463 tatgtcttcttttgggtttcttaacatatgctctaatggcacaagttaacactacc 33755408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 165 - 299
Target Start/End: Complemental strand, 3159713 - 3159579
Alignment:
Q  165 tcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttatttt 264  Q
    |||||| || ||||||| ||||| |||| || ||||| |||||| ||||||  ||||||| |||| |||||||||| ||| |||||||||||||| ||||    
T  3159713 tcaaatgtagaaataatgtattggaatgcgtacattaaatttaatctttaatgttttaatgaattgaatgcacaaagtttaagagaatatttcttttttt 3159614  T
Q  265 gagtttcttaatatgtaccctaagggcacaagtta 299  Q
     | |||||||| |||| ||||||||||||||||||    
T  3159613 aaatttcttaacatgtgccctaagggcacaagtta 3159579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 4844441 - 4844567
Alignment:
Q  181 tttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgt 280  Q
    ||||||| |||||||| |||| ||||||  |||||||||||||| |||| |||||||||||||||| | |||||||||| ||||  ||||||||| || |    
T  4844441 tttattggaatgtgtgtattatatttaatatttaactttttaataaattgaatgcacaaaattttaaaaaatatttcttcttttaggtttcttaacatat 4844540  T
Q  281 accctaagggcacaagttaacactacc 307  Q
     || ||||||||||| ||||| |||||    
T  4844541 gccataagggcacaaattaacgctacc 4844567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 9318780 - 9318863
Alignment:
Q  211 tttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcaca 294  Q
    ||||| |||| ||| |||| ||||||||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||||    
T  9318780 tttaatttttgaataaattgaatgcacaaaattttagagaatatttcttcttttgaatttcttaacatgtgccctaagggcaca 9318863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 189 - 289
Target Start/End: Complemental strand, 11842361 - 11842261
Alignment:
Q  189 aatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaag 288  Q
    |||||||||||| ||||||| || |||||||| | | |||| ||||||||||||||||||||||||||||| |||||  |||||||| |||| || ||||    
T  11842361 aatgtgtgcattgcatttaatctgtaacttttcagtgaattgaatgcacaaaattttagagaatatttcttcttttggatttcttaacatgtgccttaag 11842262  T
Q  289 g 289  Q
    |    
T  11842261 g 11842261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 30323199 - 30323079
Alignment:
Q  127 aaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatca 226  Q
    ||||| ||||||||||||   ||  ||| |||||||  ||||||||| ||||| ||||||| ||||| || ||||||||||| ||||||||||||||| |    
T  30323199 aaatgttaacttgtgtcctttaggcacatgttaatgcatcaaatatagaaatagtttattggaatgtatgtattacatttaatctttaactttttaatga 30323100  T
Q  227 attaaatgcacaaaattttag 247  Q
    ||| ||||||| |||||||||    
T  30323099 attgaatgcactaaattttag 30323079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 300
Target Start/End: Complemental strand, 2557405 - 2557258
Alignment:
Q  154 aagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaata 253  Q
    |||||||||| ||||||||||||||| ||||||  |||||||| |||| |||||| ||||||||| ||| | |  | ||||||| || |||||||||| |    
T  2557405 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaacttcttagtgatgtgaatgcac-aacttttagagaaca 2557307  T
Q  254 tttcttattttgagtttctta--atatgtaccctaagggcacaagttaa 300  Q
    ||| || ||||| ||||||||  || ||| | |||||||||||||||||    
T  2557306 tttatttttttgggtttcttaacatgtgtgctctaagggcacaagttaa 2557258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 305
Target Start/End: Complemental strand, 13657136 - 13656996
Alignment:
Q  166 caaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattt-t 264  Q
    ||||| || ||||||| ||||| |||||||| |||| | |||| ||||||  ||||||| ||||||||| ||||| ||| |  ||||||||||| ||| |    
T  13657136 caaatttagaaataatgtattggaatgtgtgtattagacttaatctttaatgttttaatgaattaaatgtacaaagtttaaacgaatatttcttttttct 13657037  T
Q  265 gagtttcttaatatgtaccctaagggcacaagttaacacta 305  Q
       ||||||||  ||| ||||||||||||||||||||||||    
T  13657036 ttatttcttaacttgtgccctaagggcacaagttaacacta 13656996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 2615113 - 2615170
Alignment:
Q  151 tacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaa 208  Q
    ||||||||||||| ||||||||||||||| || |||  ||||||||||||| ||||||    
T  2615113 tacaagttaatgaatcaaatataaaaatagttcattagaatgtgtgcattatatttaa 2615170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 5051609 - 5051563
Alignment:
Q  218 ttttaatcaattaaatgcacaaaattttagagaatatttcttatttt 264  Q
    ||||||| |||||| |||||||||||| ||||||||||||| |||||    
T  5051609 ttttaattaattaagtgcacaaaatttaagagaatatttctaatttt 5051563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 299
Target Start/End: Complemental strand, 7509724 - 7509642
Alignment:
Q  217 tttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagtta 299  Q
    ||||| || |||| |||||||||||||| |||  || |||||  ||||| ||||||||| |||| |||| |||||||||||||    
T  7509724 tttttgattaattgaatgcacaaaatttaagaacatgtttctacttttgggtttcttaacatgtgcccttagggcacaagtta 7509642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 305
Target Start/End: Complemental strand, 14571568 - 14571414
Alignment:
Q  154 aagttaatgattcaaatata---aaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagaga 250  Q
    ||||||||||| ||||||||   |||| ||  |||| ||| |||| |||| |||||||  |||| ||||| ||||| |||||| || | ||||||| | |    
T  14571568 aagttaatgatacaaatatagaaaaaaaaacgtattcaaacgtgtacattgcatttaatatttagcttttcaatcatttaaatacatagaattttaaaaa 14571469  T
Q  251 atatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacacta 305  Q
    || |||||| ||||  ||||||||| || || || || |||| ||||||||||||    
T  14571468 atgtttcttcttttaggtttcttaacatttaaccaaaaggcataagttaacacta 14571414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 307
Target Start/End: Original strand, 29680085 - 29680163
Alignment:
Q  227 attaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||||| || ||||||||||| |||||||||||| |||| | |||||||| ||| |||| || ||||||| |||||||||||    
T  29680085 attaattgtacaaaattttaaagaatatttcttcttttaaatttcttaacatg-accc-aaaggcacaaattaacactacc 29680163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 126 - 307
Target Start/End: Original strand, 25983031 - 25983212
Alignment:
Q  126 gaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatc 225  Q
    |||||| |||||||||||| ||||| | |||||||||||| ||||||| ||||||||||||| ||| |||||||| ||||||| ||||||||||| ||      
T  25983031 gaaatgctaacttgtgtcctcaagacataagttaatgatttaaatatagaaataatttattggaatatgtgcattgcatttaatctttaacttttcaaaa 25983130  T
Q  226 aattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |||| |||||||||||||||||||||||||| || ||||  ||||||||| ||||  |||||| ||||||||||||||||||    
T  25983131 aattgaatgcacaaaattttagagaatatttattcttttaggtttcttaacatgtgtcctaagagcacaagttaacactacc 25983212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 126 - 307
Target Start/End: Complemental strand, 13951255 - 13951074
Alignment:
Q  126 gaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatc 225  Q
    |||||| |||||| || || ||||| |||| ||||||||||||||||||||||||||||||| ||  |||||||| | ||||| ||||||||||||||||    
T  13951255 gaaatgttaacttttggcctcaagacacaaattaatgattcaaatataaaaataatttattggaaaatgtgcattgcgtttaatctttaactttttaatc 13951156  T
Q  226 aattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||||||||||||||||||| ||  |||||||||| |||| ||| |||||| || | ||||||||| | || |||||||||||    
T  13951155 aattaaatgcacaaaatttaaggaaatatttctttttttaagtgtcttaacatctgccctaagggtataaattaacactacc 13951074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 147 - 305
Target Start/End: Complemental strand, 40298394 - 40298236
Alignment:
Q  147 aagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaatttta 246  Q
    ||||||||||||||| | | ||||||||||||||||||||  ||||||| |||||||||||| ||||||| ||||||| |||| ||||||||||||||||    
T  40298394 aagatacaagttaataagttaaatataaaaataatttattagaatgtgtacattacatttaatctttaacattttaatgaattgaatgcacaaaatttta 40298295  T
Q  247 gagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacacta 305  Q
    || ||||||| || |||| | |||||||| ||||   ||||||||||||||||||||||    
T  40298294 gaaaatatttattcttttaaatttcttaacatgtgttctaagggcacaagttaacacta 40298236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 125 - 307
Target Start/End: Original strand, 19961521 - 19961705
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| ||| ||||||||  | || |||||||||||| |||||  || ||||| ||||||| |||||||| ||| ||||||| |||||| ||||||||    
T  19961521 ggaaatgttaatttgtgtccttatgacacaagttaatgaatcaaaagtagaaatagtttattggaatgtgtgtatttcatttaatctttaattttttaat 19961620  T
Q  225 caattaaatgcacaaaattttagagaatatttcttattttgagtttctta--atatgtaccctaagggcacaagttaacactacc 307  Q
     |||| |||||||||||||||| |||||||||||| |||||  |||||||  |||||| ||||||||||||||||||||||||||    
T  19961621 aaattgaatgcacaaaattttaaagaatatttcttcttttggatttcttaacatatgtgccctaagggcacaagttaacactacc 19961705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 128 - 300
Target Start/End: Original strand, 8233975 - 8234146
Alignment:
Q  128 aatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaa 227  Q
    |||| ||||||||| ||  |||| |||| ||||| ||||||||| | ||||||||||||| | ||||||||||| |||||| |||||||||||  || |     
T  8233975 aatgttaacttgtgcccttaagacacaaattaataattcaaataaagaaataatttattggattgtgtgcattaaatttaatctttaacttttcgatgat 8234074  T
Q  228 ttaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaa 300  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||    
T  8234075 ttaaatgcacaaaatttaagagaatatttcttcttttgagtttcttaacatgta-ccttagggcacaagttaa 8234146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 14310034 - 14309926
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||||||||||||| |||||||| |||| ||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  14310034 acaagttaatgattcaaatatagaaataattgattggaatatgtacattgcatttaaactttaactttttaatcaattaaatgcacaaaattttaaaaaa 14309935  T
Q  252 tatttctta 260  Q
    |||||||||    
T  14309934 tatttctta 14309926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 152 - 305
Target Start/End: Complemental strand, 1860290 - 1860136
Alignment:
Q  152 acaagttaatgattcaaat-ataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaa-ttaaatgcacaaaattttagag 249  Q
    |||||||||||  |||||| |||||||||||||||||||||||||||||||||||||| || | | ||||||||||| || |||||||||||||||||||    
T  1860290 acaagttaatgcatcaaattataaaaataatttattgaaatgtgtgcattacatttaatctctcattttttaatcaattttaatgcacaaaattttagag 1860191  T
Q  250 aatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacacta 305  Q
    ||||||| || |||||| |||||||| || | || |||| ||||||||||||||||    
T  1860190 aatattttttcttttga-tttcttaacatatgccttaagagcacaagttaacacta 1860136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 152 - 307
Target Start/End: Original strand, 36527421 - 36527575
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||  ||||||||| ||||| ||||||| | |||||||||| ||||||| ||||||||||| ||| |||| |||||||||||||||||||||    
T  36527421 acaagttaatgtatcaaatatagaaatagtttattggagtgtgtgcattgcatttaatctttaactttt-aataaattgaatgcacaaaattttagagaa 36527519  T
Q  252 tatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||||| || |||||  |||||||| ||||  | |||||||||||||||||||||||    
T  36527520 tatttattcttttggatttcttaacatgtgtcttaagggcacaagttaacactacc 36527575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 125 - 299
Target Start/End: Complemental strand, 14576085 - 14575911
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| ||| ||||| ||  |||| | |||||||| | | ||||||| ||||| ||||| ||||||||||||||||||| ||  ||||||||||||||    
T  14576085 ggaaatgttaatttgtgcccttaagacataagttaataagtaaaatatagaaatagtttatcgaaatgtgtgcattacattgaatatttaactttttaat 14575986  T
Q  225 caattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagtta 299  Q
     |||| |||||||||||||||||  ||||||| || ||||||||||||||| |||| || |||||||||||||||    
T  14575985 gaattgaatgcacaaaattttagtaaatattttttcttttgagtttcttaacatgttccgtaagggcacaagtta 14575911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 18334518 - 18334397
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||||||||||||| ||| || |||||  |||||||||||| |||||||  || ||||||||||||| ||||||||||||||||||||| ||    
T  18334518 acaagttaatgattcaaatatagaaaaaacttatttgaatgtgtgcattgcatttaatattaaactttttaatcatttaaatgcacaaaattttagaaaa 18334419  T
Q  252 tatttcttattttgagtttctt 273  Q
    | ||| || ||||  |||||||    
T  18334418 tgtttattcttttaggtttctt 18334397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 166 - 307
Target Start/End: Original strand, 30685585 - 30685726
Alignment:
Q  166 caaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttg 265  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  ||||  |||||||| |||| |||||||||||||||| | |||||||||| ||||     
T  30685585 caaatatagaaatagtttattgaaatatgtgcattacatttaatttttagttttttaatgaattgaatgcacaaaattttataaaatatttcttctttta 30685684  T
Q  266 agtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    | |||||||| ||| |  |||||| || || |||||||||||    
T  30685685 aatttcttaacatgaaatctaaggacataacttaacactacc 30685726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 146 - 306
Target Start/End: Complemental strand, 15591794 - 15591634
Alignment:
Q  146 caagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaatttt 245  Q
    ||||| |||||||||||| ||||||||| ||||| ||| |||| |||| |||||| | ||||| |||||| |||||||| |||| |||||||||||||||    
T  15591794 caagacacaagttaatgaatcaaatatagaaatagtttgttgagatgtatgcattccttttaatctttaattttttaatgaattgaatgcacaaaatttt 15591695  T
Q  246 agagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactac 306  Q
    |||||| ||   || |||| ||||| |||| || | || | | ||||||||||||||||||    
T  15591694 agagaaaataatttcttttaagttttttaacatttgcctttaaggcacaagttaacactac 15591634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 287
Target Start/End: Original strand, 25693651 - 25693789
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaat---gtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttaga 248  Q
    |||| ||||| ||||||||||||||||||||||||| |||   |||||||||| |||||| ||||||||||||||| |||| ||| |||||||||| | |    
T  25693651 acaaattaataattcaaatataaaaataatttattggaataatgtgtgcattaaatttaatctttaactttttaataaattgaattcacaaaatttaaaa 25693750  T
Q  249 gaatatttcttattttgagtttcttaatatgtaccctaa 287  Q
    |||||| |||| ||||   |||||||| ||||| |||||    
T  25693751 gaatatctcttcttttagttttcttaacatgtatcctaa 25693789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 259
Target Start/End: Original strand, 33208414 - 33208521
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||| ||||||||| ||||||||||||||||||| || |||| ||||||  |||||||||||||| |||  |||||||||||||| | ||||    
T  33208414 acaagttaatgaatcaaatatagaaataatttattgaaatgtatgtattaaatttaatatttaactttttaatgaatggaatgcacaaaatttaatagaa 33208513  T
Q  252 tatttctt 259  Q
    || |||||    
T  33208514 tacttctt 33208521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 3938396 - 3938514
Alignment:
Q  147 aagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaatttta 246  Q
    |||| |||||||||||||| ||||||| ||||||||||||| ||||| |||||| |||||||  | ||| |||||||| |||| |||||| |||||||||    
T  3938396 aagacacaagttaatgatttaaatatagaaataatttattggaatgtatgcattgcatttaatatctaattttttaatgaattgaatgcataaaatttta 3938495  T
Q  247 gagaatatttcttattttg 265  Q
     | |||||||||| |||||    
T  3938496 aaaaatatttcttcttttg 3938514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 306
Target Start/End: Complemental strand, 7406311 - 7406197
Alignment:
Q  192 gtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggc 291  Q
    ||||||||||||||||| ||||| ||||||||| | || |||||| ||||||||| | |||||||||| ||||  ||||||||| ||||  |||||||||    
T  7406311 gtgtgcattacatttaatctttagctttttaatgagttgaatgcataaaattttataaaatatttcttcttttatgtttcttaacatgtgtcctaagggc 7406212  T
Q  292 acaagttaacactac 306  Q
    |||| ||||||||||    
T  7406211 acaaattaacactac 7406197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 156 - 305
Target Start/End: Original strand, 4746048 - 4746197
Alignment:
Q  156 gttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatt 255  Q
    |||||||| ||||||||| ||||||||||||| ||||| |  |||  |||||  ||||||||||||||| |||| |||| |||| |||||| ||||||||    
T  4746048 gttaatgaatcaaatatagaaataatttattggaatgtatttattttatttattctttaactttttaatgaattgaatgtacaagattttatagaatatt 4746147  T
Q  256 tcttattttgagtttcttaatatgtaccctaagggcacaagttaacacta 305  Q
    |||| |||||||||| |||| ||||     ||||| ||||||||||||||    
T  4746148 tctttttttgagtttattaacatgtgtttcaagggtacaagttaacacta 4746197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 152 - 265
Target Start/End: Complemental strand, 14622583 - 14622470
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||||||||||||| ||||||||||||| || ||||||||| |||| ||  ||||||||| |||| ||||  ||| ||||||||||||| ||    
T  14622583 acaagttaatgattcaaatatagaaataatttattggaaggtgtgcatttcattcaatatttaactttctaataaattggatgaacaaaattttagaaaa 14622484  T
Q  252 tatttcttattttg 265  Q
    ||||| || |||||    
T  14622483 tattttttcttttg 14622470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 28574926 - 28574794
Alignment:
Q  175 aaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttctta 274  Q
    ||||||| ||||| |||  |||||||| | ||||  |||||  ||||||| ||||||||||||||| ||| ||| |||||||||| |||||  ||| |||    
T  28574926 aaataatgtattggaatacgtgcattaaacttaatatttaatgttttaatgaattaaatgcacaaagtttaagaaaatatttctttttttggatttttta 28574827  T
Q  275 atatgtaccctaagggcacaagttaacactacc 307  Q
    | |||| |||||||| |||||||||||||||||    
T  28574826 acatgtgccctaaggacacaagttaacactacc 28574794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 30721407 - 30721487
Alignment:
Q  166 caaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaatttta 246  Q
    |||||||| ||||| ||||||||||||||||||||||||||||  ||||| |||||||| | || ||||||||||||||||    
T  30721407 caaatatagaaatagtttattgaaatgtgtgcattacatttaatttttaattttttaatgagttgaatgcacaaaatttta 30721487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 133 - 280
Target Start/End: Complemental strand, 42179929 - 42179789
Alignment:
Q  133 taacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaa 232  Q
    ||||||||| |  ||| |||||||||||||||||||||||| ||||||||      | ||||||||||  | |||| ||||||||||||||| |||||||    
T  42179929 taacttgtgccatcaaaatacaagttaatgattcaaatatataaataatt------attgtgtgcattgtaattaatctttaactttttaattaattaaa 42179836  T
Q  233 tgcacaaaattttagagaatatttcttattttgagtttcttaatatgt 280  Q
    |||| |||| |||||||||||||| || ||||  ||||||||| ||||    
T  42179835 tgcataaaa-tttagagaatattttttcttttaggtttcttaacatgt 42179789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 307
Target Start/End: Complemental strand, 41816638 - 41816496
Alignment:
Q  165 tcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttatttt 264  Q
    ||||| ||| ||||||| ||||| ||||||| ||||| ||||||  ||||| | |||||  ||||||||||||||||||| || ||||| ||||  ||||    
T  41816638 tcaaaaatagaaataatgtattggaatgtgtacattaaatttaatttttaa-tgtttaaagaattaaatgcacaaaatttaagggaataattctattttt 41816540  T
Q  265 gag-tttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     || |||||||| |||| |||||||||| |||||||||||||||    
T  41816539 tagatttcttaacatgtgccctaagggcgcaagttaacactacc 41816496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 42011310 - 42011406
Alignment:
Q  211 tttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactaccat 309  Q
    |||||||||||| | ||||||||||||||||||||| |||||| ||||| |||||  |||||||| |  |||| |||| ||||||||||||||||||||    
T  42011310 tttaactttttagtgaattaaatgcacaaaattttatagaatacttcttcttttggatttcttaaca--taccttaagtgcacaagttaacactaccat 42011406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 730856 - 730782
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatca 226  Q
    |||| ||||||||||||||||| ||||||||||||  |||||||| ||||||||||| ||| |||||||||||||    
T  730856 acaaattaatgattcaaatatagaaataatttattagaatgtgtgtattacatttaatcttgaactttttaatca 730782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 165 - 303
Target Start/End: Original strand, 1352790 - 1352928
Alignment:
Q  165 tcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttatttt 264  Q
    ||||||||| |||  ||| ||||||||||||   ||| |||||| ||||||||||||||| |||| ||||||||| |||| ||||||||||| || ||||    
T  1352790 tcaaatatagaaacgattaattgaaatgtgtatgttaaatttaatctttaactttttaatgaattgaatgcacaatatttaagagaatattttttctttt 1352889  T
Q  265 gagtttcttaatatgtaccctaagggcacaagttaacac 303  Q
       |||||||| ||||  | |||| ||||||||||||||    
T  1352890 tgatttcttaacatgtgtcataagagcacaagttaacac 1352928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 264
Target Start/End: Original strand, 4702549 - 4702656
Alignment:
Q  158 taatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaacttt-aactttttaatcaattaaatgcacaaaattttagagaatattt 256  Q
    |||||||||||||||| |||||| |||||| ||||||||| ||  |||||  |||| ||||||| |||  ||| ||||||||||||||||||||| ||||    
T  4702549 taatgattcaaatatagaaataaattattggaatgtgtgctttttatttagtcttttaacttttaaatgcattgaatgcacaaaattttagagaacattt 4702648  T
Q  257 cttatttt 264  Q
    ||| ||||    
T  4702649 cttctttt 4702656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 302
Target Start/End: Original strand, 29429686 - 29429770
Alignment:
Q  218 ttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaaca 302  Q
    ||||||| ||||||||||||||||||| ||| |  ||||||  ||||| ||| ||||| |||| |||||||||||||||||||||    
T  29429686 ttttaattaattaaatgcacaaaatttaagaaacaatttctacttttgggttgcttaacatgtgccctaagggcacaagttaaca 29429770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 280
Target Start/End: Original strand, 1355772 - 1355901
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||  | ||||||| ||| | || |||||||| |||  |||| |||||| ||||||| ||||||| |||| |||||| ||||||| ||||||    
T  1355772 acaagttaatggattaaatatagaaacagttaattgaaatatgtatattaaatttaatctttaacattttaataaatttaatgcataaaatttaagagaa 1355871  T
Q  252 ta-tttcttattttgagtttcttaatatgt 280  Q
    || ||| || |||||||||| |||| ||||    
T  1355872 tattttttttttttgagttttttaacatgt 1355901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 3257536 - 3257481
Alignment:
Q  165 tcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttt 220  Q
    ||||||||||||||| ||||||| ||| |||||||| ||||||| |||||||||||    
T  3257536 tcaaatataaaaatagtttattggaatatgtgcatttcatttaatctttaactttt 3257481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 299
Target Start/End: Original strand, 16843866 - 16844039
Alignment:
Q  127 aaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatca 226  Q
    ||||| ||||||| ||||  |||| | | |||||||| |||||||||  |||  ||| ||| ||||||||||||| ||||||  ||| | ||| |||| |    
T  16843866 aaatgctaacttgggtccttaagacataggttaatgaatcaaatatagtaattttttgttggaatgtgtgcattaaatttaatttttgaatttgtaataa 16843965  T
Q  227 attaaatgcacaaaattttagagaatatttct-tattttgagtttcttaatatgtaccctaagggcacaagtta 299  Q
    |  |||||||||||| || | |||||||||||   ||||| ||||||||   ||| ||||||||||||||||||    
T  16843966 acaaaatgcacaaaacttgaaagaatatttctaccttttgggtttcttatcttgtgccctaagggcacaagtta 16844039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 41318170 - 41318209
Alignment:
Q  268 tttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |||||||| |||||||||||||||| ||||||||||||||    
T  41318170 tttcttaacatgtaccctaagggcataagttaacactacc 41318209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 10083731 - 10083809
Alignment:
Q  166 caaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattt 244  Q
    |||||||| ||||||| ||||  |||| |||| |||  ||||| ||||||  ||||||| |||||||||||||||||||    
T  10083731 caaatatagaaataatatattccaatgcgtgcgttaactttaatctttaatgttttaatgaattaaatgcacaaaattt 10083809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 30784302 - 30784242
Alignment:
Q  218 ttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatat 278  Q
    ||||||| |||| |||||| ||||||| ||| || ||||||  ||||||||||||||||||    
T  30784302 ttttaattaattgaatgcataaaatttaagaaaaaatttctacttttgagtttcttaatat 30784242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 127 - 307
Target Start/End: Complemental strand, 50328531 - 50328351
Alignment:
Q  127 aaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatca 226  Q
    ||||| ||||||||||||  ||| ||||||||||||| ||| ||||| |||||   ||||| |||||||||||||||||||| ||||||||||||||| |    
T  50328531 aaatgttaacttgtgtccttaaggtacaagttaatgaatcagatatagaaataggatattggaatgtgtgcattacatttaatctttaactttttaatga 50328432  T
Q  227 attaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |||  |||||||||||||||||||||||||||| ||| | ||||||||| |||| |||| ||||||||| |||||||||||    
T  50328431 attggatgcacaaaattttagagaatatttcttttttggggtttcttaacatgtgcccttagggcacaaattaacactacc 50328351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 47388488 - 47388625
Alignment:
Q  170 tataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtt 269  Q
    |||||||||| |||||||||||||||| ||||||||||| ||||||| ||||||| |||| |||| |||||||||||||||||||||||| |||||  ||    
T  47388488 tataaaaatattttattgaaatgtgtgtattacatttaatctttaaccttttaatgaattgaatgtacaaaattttagagaatatttcttcttttggatt 47388587  T
Q  270 tcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  47388588 tcttaacatgtgccctaagggcacaagttaacactacc 47388625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 125 - 307
Target Start/End: Original strand, 26740739 - 26740921
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| |||||||||  |  |||| ||| |||||||| ||||||||||||||| ||||||| ||| |||| ||||||| ||| |||||||||||||||    
T  26740739 ggaaatgttaacttgtgctcttaagacacacgttaatgaatcaaatataaaaatattttattggaatatgtgtattacatgtaatctttaactttttaat 26740838  T
Q  225 caattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     |||| ||||||||||||||||||||||||||||| |||||| |||||||  |||| || |||| |||||| |||||||||||    
T  26740839 gaattgaatgcacaaaattttagagaatatttcttcttttgaatttcttagcatgtgccttaagagcacaaattaacactacc 26740921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 152 - 298
Target Start/End: Complemental strand, 55323075 - 55322929
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||| ||| ||||||||| ||||||||||||| ||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||| | ||    
T  55323075 acaagttagtgaatcaaatatagaaataatttattggaatttgtgcattacatttaatctttaactttttaatgaattgaatgcacaaaattttaaaaaa 55322976  T
Q  252 tatttcttattttgagtttcttaatatgtaccctaagggcacaagtt 298  Q
    |||||||| ||| | ||||||||| |||| |||||||||||||||||    
T  55322975 tatttcttctttggggtttcttaacatgtgccctaagggcacaagtt 55322929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 165 - 313
Target Start/End: Complemental strand, 49250160 - 49250012
Alignment:
Q  165 tcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttatttt 264  Q
    ||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||| |||| ||||||||||||||||  |||||||| || ||||    
T  49250160 tcaaatataaaaatagtttattgaaatgtctgtattacatttaatctttaactttttaatgaattgaatgcacaaaattttaatgaatatttattctttt 49250061  T
Q  265 gagtttcttaatatgtaccctaagggcacaagttaacactaccatatct 313  Q
    |  |||||||| || | |||||||||||||||||||||||||| |||||    
T  49250060 ggatttcttaacatttgccctaagggcacaagttaacactaccctatct 49250012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 125 - 307
Target Start/End: Original strand, 53133448 - 53133630
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| ||||||||| ||  |||  ||||||||||||  |||||||| |||||| | |||| ||| |||||||||||||||| |||||| ||||||||    
T  53133448 ggaaatgttaacttgtgcccttaaggcacaagttaatgaaacaaatatagaaataactcattggaatatgtgcattacatttaatctttaaatttttaat 53133547  T
Q  225 caattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     | || ||||| |||||||||| | |||||||||| ||||  ||||||||| |||| ||||||||||||||||||||||||||    
T  53133548 gagttgaatgcgcaaaattttataaaatatttcttcttttaggtttcttaacatgtgccctaagggcacaagttaacactacc 53133630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 153 - 264
Target Start/End: Complemental strand, 41236149 - 41236038
Alignment:
Q  153 caagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaat 252  Q
    ||||||||| | ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||    
T  41236149 caagttaataaatcaaatatagaaataatttattaaaatgtgtgcattacatttaatctttaactttttaataaattaaatgcacaaaattttataaaat 41236050  T
Q  253 atttcttatttt 264  Q
    ||||||| ||||    
T  41236049 atttcttctttt 41236038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 157 - 306
Target Start/End: Original strand, 45891303 - 45891448
Alignment:
Q  157 ttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatattt 256  Q
    ||||||| ||||||||| ||||| ||||||||| | |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| |    
T  45891303 ttaatgagtcaaatatagaaatagtttattgaagtttgtgcattacatttaatctttaactttttaatgaattaattgcacaaaattttagagaatatat 45891402  T
Q  257 cttattttgagtttcttaatatgtaccctaagggcacaagttaacactac 306  Q
    ||| |||| |||||||||| |||   ||||| | ||||||||||||||||    
T  45891403 cttcttttaagtttcttaacatg---cctaa-gacacaagttaacactac 45891448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 153 - 307
Target Start/End: Complemental strand, 12800078 - 12799924
Alignment:
Q  153 caagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaat 252  Q
    |||||||||||||||||||||  ||  |||||||| ||||||||| ||  ||| ||  |||||||||||||||| ||||||||||||||||||||| | |    
T  12800078 caagttaatgattcaaatataggaaagatttattggaatgtgtgctttgtattcaatatttaactttttaatcatttaaatgcacaaaattttagaaatt 12799979  T
Q  253 atttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     |||||| |||| |||||||||| |||| ||||||||||| ||||||||||||||    
T  12799978 gtttcttcttttaagtttcttaacatgtgccctaagggcataagttaacactacc 12799924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 42674021 - 42674154
Alignment:
Q  147 aagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaatttta 246  Q
    |||||||||||||||||  ||||||||||||||||| |||| ||||| ||||||| |||||| |||||| |||||||| | || ||||||||||||||||    
T  42674021 aagatacaagttaatgaaacaaatataaaaataattcattggaatgtatgcattatatttaatctttaattttttaatgagttgaatgcacaaaatttta 42674120  T
Q  247 gagaatatttcttattttgagtttcttaatatgt 280  Q
     | |||||||||| |||| |||||||||| ||||    
T  42674121 taaaatatttcttcttttaagtttcttaacatgt 42674154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 125 - 285
Target Start/End: Complemental strand, 34119061 - 34118901
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| ||| ||||| || ||||| |||||||||||||||||||||| |||   ||||||||||| |||||||| |||| ||  ||||||||||||||    
T  34119061 ggaaatgttaatttgtgccctcaagacacaagttaatgattcaaatatagaaaatttttattgaaatatgtgcattgcattcaatatttaactttttaat 34118962  T
Q  225 caattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccct 285  Q
    || ||||||||||||||||||| |||||||||  | ||||  ||||||||| |||| ||||    
T  34118961 catttaaatgcacaaaattttatagaatatttactcttttaggtttcttaacatgtgccct 34118901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 306
Target Start/End: Original strand, 4442251 - 4442382
Alignment:
Q  175 aaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttctta 274  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| | |||| |||||| | |||||||||||||||||||| ||||   |||||||    
T  4442251 aaatagtttattgaaatgtgtgcatttcatttaaactttaactttttagtgaattgaatgcaaataattttagagaatatttcttctttttgttttctta 4442350  T
Q  275 atatgtaccctaagggcacaagttaacactac 306  Q
    | || |  | ||||||||||||||||||||||    
T  4442351 acatatgtcgtaagggcacaagttaacactac 4442382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 161 - 307
Target Start/End: Original strand, 17340333 - 17340479
Alignment:
Q  161 tgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttctta 260  Q
    ||||| |||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||| |||| | |||| |||||||||||||||  || ||     
T  17340333 tgattaaaatatgaaaatagtttattggaatgtgtgcattacatttaatctttaactttttaataaattgattgcataaaattttagagaatgctttttc 17340432  T
Q  261 ttttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||||   |||||||| |||| ||||||| || |||||||||||||||    
T  17340433 ttttagatttcttaacatgtgccctaagagcccaagttaacactacc 17340479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 152 - 307
Target Start/End: Original strand, 37056183 - 37056339
Alignment:
Q  152 acaagttaatgattcaaatataa-aaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagaga 250  Q
    |||||||||||| |||||||||| ||||||||||||| || | |||||||| |||||| ||||||||||||||| |||| ||| ||||||| ||||||||    
T  37056183 acaagttaatgaatcaaatataataaataatttattggaaagggtgcattaaatttaatctttaactttttaatgaattgaatacacaaaactttagaga 37056282  T
Q  251 atatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||| ||||| |||| ||||| |||  |||| | ||||||| | |||||| |||||||    
T  37056283 ataattcttcttttaagttttttatcatgtgcgctaagggtaaaagttagcactacc 37056339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 152 - 275
Target Start/End: Complemental strand, 48622376 - 48622255
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||||||| ||| |||||  | ||| ||||||||||||||| |||| ||  |||||||||||||||| ||||||||||||||||||||||||    
T  48622376 acaagttaatgattcatatagaaaaa--acttaatgaaatgtgtgcattgcattcaatatttaactttttaatcatttaaatgcacaaaattttagagaa 48622279  T
Q  252 tatttcttattttgagtttcttaa 275  Q
    |||||||| ||||  |||||||||    
T  48622278 tatttcttcttttaggtttcttaa 48622255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 126 - 229
Target Start/End: Original strand, 38354254 - 38354357
Alignment:
Q  126 gaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatc 225  Q
    |||||| ||||||||||||  ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||  ||||||||||||||     
T  38354254 gaaatgttaacttgtgtccttaagatacaagttaatgaatcaaatatagaaataatttattgaaatgtatgcattacaattaatgtttaactttttaata 38354353  T
Q  226 aatt 229  Q
    ||||    
T  38354354 aatt 38354357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 8171077 - 8171174
Alignment:
Q  179 aatttattgaaatgtgtgcattacatttaaacttt-aactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaa 275  Q
    ||||||||||||||||||||||| |||||| |||| ||||||||||| |||| ||||||||||||||||  ||||||||||| |||||||||| ||||    
T  8171077 aatttattgaaatgtgtgcattatatttaatcttttaactttttaataaattgaatgcacaaaattttaatgaatatttcttcttttgagttttttaa 8171174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 125 - 307
Target Start/End: Original strand, 46393123 - 46393305
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| ||||||||||||  |||  | |||||||||  | |||  || ||||| ||||||  |||||||||||| ||||| |  |||| |||||||||    
T  46393123 ggaaatgttaacttgtgtccttaaggcataagttaatgtattaaaagtagaaatagtttattagaatgtgtgcatttcatttcatttttacctttttaat 46393222  T
Q  225 caattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     |||| |||||||| ||||||||||||||||| || |||||  |||||||| |||| | |||||| ||||| |||||||||||    
T  46393223 gaattgaatgcacacaattttagagaatatttattcttttggttttcttaacatgtgctctaaggacacaaattaacactacc 46393305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 152 - 285
Target Start/End: Complemental strand, 31204443 - 31204310
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||| | ||||||||| ||||  ||||||| || ||||| ||||||||||| ||||||||||||||| |||| |||||||| ||||| | ||||    
T  31204443 acaagttaataaatcaaatatagaaatggtttattggaaggtgtgtattacatttaatctttaactttttaataaattgaatgcacacaatttaaaagaa 31204344  T
Q  252 tatttcttattttgagtttcttaatatgtaccct 285  Q
    ||||  || ||||| ||||||||| |||| ||||    
T  31204343 tattatttcttttgggtttcttaacatgtgccct 31204310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 966672 - 966756
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaa 209  Q
    ||||||| ||||||| |||| ||||| |||||||||||| ||||||||| ||||| ||||||||||||||| |||||||||||||    
T  966672 ggaaatgctaacttgcgtcctcaagacacaagttaatgaatcaaatatagaaatagtttattgaaatgtgtacattacatttaaa 966756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 307
Target Start/End: Complemental strand, 14593709 - 14593575
Alignment:
Q  173 aaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttct 272  Q
    ||||| || |||||| |||||||| ||| |||| ||  ||||| |||||||||||||||||||| ||||||||| | |||||||||| ||||   ||| |    
T  14593709 aaaaaaaacttattgcaatgtgtgtattgcattaaatgtttaaatttttaatcaattaaatgcataaaattttaaaaaatatttcttcttttagattttt 14593610  T
Q  273 taatatgtaccctaagggcacaagttaacactacc 307  Q
    |||||||  |||||| |||| ||||||||||||||    
T  14593609 taatatgggccctaacggcataagttaacactacc 14593575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 31217065 - 31216952
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| ||||||||| ||  |||| |||||||||| | ||||||||| ||||  ||||||| || ||||| ||||||||||| |||||||||||||||    
T  31217065 ggaaatgctaacttgtgcccttaagacacaagttaataaatcaaatatagaaatggtttattggaaggtgtgtattacatttaatctttaactttttaat 31216966  T
Q  225 caattaaatgcaca 238  Q
     |||| ||||||||    
T  31216965 gaattgaatgcaca 31216952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 9319887 - 9319959
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    |||| ||||| | ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||    
T  9319887 acaacttaattaatcaaatataaaaataatttattgcaatgtgtgcattatatttaatctttaactttttaat 9319959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 24453161 - 24453273
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||| | |||||||||  ||| | |||||||||| ||||||||| |||||| ||||||||||| ||| | || |||||| ||||||| ||||||    
T  24453161 acaagttaataaatcaaatatatgaatgagttattgaaatatgtgcattaaatttaatctttaacttttcaatgatttgaatgcataaaatttaagagaa 24453260  T
Q  252 tatttcttatttt 264  Q
    |||||| ||||||    
T  24453261 tatttcatatttt 24453273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 126 - 306
Target Start/End: Complemental strand, 45088372 - 45088201
Alignment:
Q  126 gaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatc 225  Q
    |||||| |||||||||| |  |||  || ||||||| | |||||||||||||||  |||||| |||||||||||||| |||||         ||| |||     
T  45088372 gaaatgttaacttgtgttcttaaggcacgagttaataaatcaaatataaaaataggttattggaatgtgtgcattacttttaa---------tttgaatg 45088282  T
Q  226 aattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactac 306  Q
    ||||||||||| ||||||||||||||  ||| || ||||| ||||||||| |||| |||||| |||| |||||||||||||    
T  45088281 aattaaatgcataaaattttagagaaagttttttcttttgggtttcttaacatgttccctaaaggcataagttaacactac 45088201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 307
Target Start/End: Original strand, 31861062 - 31861214
Alignment:
Q  154 aagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaata 253  Q
    |||||||| | |||||||| ||| |||||||  |||| |||||||||| |||||| ||||||||||| ||| | ||||||||||||| ||| | ||||||    
T  31861062 aagttaataaatcaaatatgaaa-taatttaa-gaaacgtgtgcattaaatttaatctttaacttttcaatgatttaaatgcacaaactttaaaagaata 31861159  T
Q  254 tttctt-attttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||| ||  ||||||||||||||| |||| || | ||| |||||||||||| ||||    
T  31861160 ttttttctttttgagtttcttaacatgtgcctttaggacacaagttaacattacc 31861214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 16067877 - 16067812
Alignment:
Q  181 tttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaatttta 246  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| |||| ||| ||||||||||||    
T  16067877 tttattgaaatgtgtgtattacatttaatctttaactttttaatgaattgaatacacaaaatttta 16067812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 307
Target Start/End: Original strand, 34291243 - 34291397
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    ||||||||||||| |||||||||   |  ||||||| |||||| ||||| |||||||  |||||| ||||||| | ||||||||| ||| |||| || ||    
T  34291243 acaagttaatgatccaaatataattttt-tttattggaatgtgcgcattgcatttaatatttaaccttttaataatttaaatgcataaattttttgaaaa 34291341  T
Q  252 tatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    | ||| || ||||  |||| | || |||| ||||||||||||||||||||||||||    
T  34291342 tgtttttttttttaggtttttaaacatgtgccctaagggcacaagttaacactacc 34291397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 5807428 - 5807358
Alignment:
Q  211 tttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgta 281  Q
    ||||| |||||||| ||||||||||||||||||||| | ||||||| || |||||| |||||||| |||||    
T  5807428 tttaattttttaatgaattaaatgcacaaaattttaaaaaatattttttcttttgaatttcttaacatgta 5807358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 307
Target Start/End: Complemental strand, 45220061 - 45219918
Alignment:
Q  166 caaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttct---tatt 262  Q
    ||||| || ||||| | ||||| |||| ||| |||| |||||| ||||||  ||||||| |||| |||||||||| |||  |||||| ||| |   ||||    
T  45220061 caaatgtataaatattatattggaatgcgtgtattaaatttaatctttaatgttttaatgaattgaatgcacaaagtttatgagaatttttttatttatt 45219962  T
Q  263 ttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    || | |||||||| |||| ||||||||||||||||||||||||||    
T  45219961 ttta-tttcttaacatgtgccctaagggcacaagttaacactacc 45219918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 33176496 - 33176581
Alignment:
Q  171 ataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatattt 256  Q
    ||||||||| ||||||  ||| ||||||||||||||||  |||||||||| ||| |||| ||| |||||||||||| | |||||||    
T  33176496 ataaaaatagtttattagaatatgtgcattacatttaatatttaacttttaaataaatttaatacacaaaattttaaaaaatattt 33176581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 2805913 - 2805870
Alignment:
Q  205 ttaaactttaactttttaatcaattaaatgcacaaaattttaga 248  Q
    |||| |||||||||||||||||||||||||||||||| ||||||    
T  2805913 ttaatctttaactttttaatcaattaaatgcacaaaactttaga 2805870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 302
Target Start/End: Original strand, 47732851 - 47733006
Alignment:
Q  147 aagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaatttta 246  Q
    |||| ||||||||| || |||||||||  ||   ||| ||||||||| ||||||  ||||||  || || ||| |||| |||| || ||| ||||||| |    
T  47732851 aagacacaagttaacgagtcaaatatagtaactttttgttgaaatgtatgcattgaatttaattttaaaatttataataaattgaaagcaaaaaatttga 47732950  T
Q  247 gagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaaca 302  Q
    ||||| ||||||  ||||  ||| ||||| |||||||||||| |||||| ||||||    
T  47732951 gagaacatttctacttttatgttccttaacatgtaccctaagagcacaaattaaca 47733006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 38354370 - 38354420
Alignment:
Q  214 aactttttaatcaattaaatgcacaaaattttagagaatatttcttatttt 264  Q
    ||||||||||| |||||||| |||||||||||||| ||| ||| |||||||    
T  38354370 aactttttaataaattaaatccacaaaattttagataattttttttatttt 38354420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 41763411 - 41763375
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattga 188  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  41763411 acaaattaatgattcaaatatataaataatttattga 41763375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 302
Target Start/End: Original strand, 50685669 - 50685753
Alignment:
Q  218 ttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaaca 302  Q
    ||||||| |||| |||||||||||||  ||| |||||||||  |||||| || ||||| |||| |||| || ||||| |||||||    
T  50685669 ttttaattaattgaatgcacaaaattcaagaaaatatttctatttttgaattgcttaaaatgtgcccttagagcacaggttaaca 50685753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 125 - 307
Target Start/End: Complemental strand, 41519656 - 41519472
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| ||||||||| || ||||  ||||||||||||||| |||||| ||||||||||||||||  |||||||| ||||||| |||||| ||||||||    
T  41519656 ggaaatgctaacttgtgccctcaaggcacaagttaatgattcgaatatagaaataatttattgaaaaatgtgcattgcatttaatctttaattttttaat 41519557  T
Q  225 caattaaatgcacaaaattttagagaatatttct--tattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |||||||||||||||| ||||||  |||||||||  | |||| ||||| |||| |||| ||||||| ||||||||||||||||||    
T  41519556 caattaaatgcacaaagttttaggaaatatttcttctcttttaagtttattaacatgtgccctaagagcacaagttaacactacc 41519472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 125 - 307
Target Start/End: Original strand, 53287384 - 53287566
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| ||||||||| ||  |||  |||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||  | |||||||| |||    
T  53287384 ggaaatgttaacttgtgcccttaagccacaagttaatgattcaaatatagaaatcatttattggaatgtgtgcattgcatttaatttgtaacttttcaat 53287483  T
Q  225 caattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     |||| ||||||||||||||||||||||||||||| |||||  |||||||| |||| || ||||| |||| ||||||||||||    
T  53287484 gaattgaatgcacaaaattttagagaatatttcttcttttggatttcttaacatgtgccttaaggtcacaggttaacactacc 53287566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 152 - 308
Target Start/End: Complemental strand, 12790003 - 12789847
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    ||||||||| |||||| ||| | ||||||||| |||||||| || |||||||||||| ||||||||||||||| |||| ||| || ||||||||||| ||    
T  12790003 acaagttaacgattcatataaagaaataattttttgaaatgcgtacattacatttaatctttaactttttaataaattgaatacataaaattttagaaaa 12789904  T
Q  252 tatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacca 308  Q
    ||||| || ||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  12789903 tatttattcttttgagtttcttaacatgtgccctaaggacacaagttaacactacca 12789847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 159 - 307
Target Start/End: Complemental strand, 24657351 - 24657203
Alignment:
Q  159 aatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttct 258  Q
    ||||||||||||||| |||| |||||||| ||||||||||||| |||||| ||||||||||||||| |||| ||| |||||||||||||| |||||||||    
T  24657351 aatgattcaaatatagaaattatttattggaatgtgtgcattatatttaatctttaactttttaataaattgaatacacaaaattttagaaaatatttct 24657252  T
Q  259 tattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |  ||||| |||||||| ||||  |||||||||| ||||||||||||||    
T  24657251 ttctttgaatttcttaacatgtgtcctaagggcataagttaacactacc 24657203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 152 - 307
Target Start/End: Original strand, 20379018 - 20379173
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||||||||||||| |||||| |||||  ||||||||||||  |||||  ||||||||||| |||  ||| |||||||||||||||||||||    
T  20379018 acaagttaatgattcaaatatagaaataaattattagaatgtgtgcattttatttagtctttaacttttaaatgcattgaatgcacaaaattttagagaa 20379117  T
Q  252 tatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     ||||||| ||||||||||||||| ||||| ||||||| |||||||||||| ||||    
T  20379118 catttcttcttttgagtttcttaacatgtatcctaaggacacaagttaacattacc 20379173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 157 - 307
Target Start/End: Original strand, 28554166 - 28554315
Alignment:
Q  157 ttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatattt 256  Q
    ||||||||||||||||| |||||||||||||||||||||| |||  ||||||  ||||||||||| |||||||||||||||||||||||| | |||||||    
T  28554166 ttaatgattcaaatatagaaataatttattgaaatgtgtgtattgtatttaat-tttaactttttgatcaattaaatgcacaaaattttaaaaaatattt 28554264  T
Q  257 cttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||| ||||     |||||| |||| |||| ||||||||| |||||||||||    
T  28554265 cttcttttagaagtcttaacatgtgccctgagggcacaaattaacactacc 28554315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 307
Target Start/End: Complemental strand, 42791193 - 42791040
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||  || ||||||||| |||||||| | ||||||||||||||||||||  ||||| |||||||| |||| |||||||||||||| ||||||    
T  42791193 acaagttaatgcatcgaatataaaagtaatttatgggaatgtgtgcattacatttaat-tttaagtttttaatgaattgaatgcacaaaattt-agagaa 42791096  T
Q  252 tatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |||||||| ||||  ||||||||| |||| |  ||||||||||||||||| |||||    
T  42791095 tatttcttctttttggtttcttaacatgtgctataagggcacaagttaacgctacc 42791040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 159 - 264
Target Start/End: Complemental strand, 28392265 - 28392160
Alignment:
Q  159 aatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttct 258  Q
    ||||| ||||||| | ||||| |||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||||| |||||||||||    
T  28392265 aatgaatcaaataaacaaatagtttattgaaatgtgtgcattacatttaatctttaactttttaatgtattgaatgcacaaaattttaaagaatatttct 28392166  T
Q  259 tatttt 264  Q
    | ||||    
T  28392165 tctttt 28392160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 126 - 280
Target Start/End: Original strand, 30732758 - 30732912
Alignment:
Q  126 gaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatc 225  Q
    |||||| ||||||||  ||  ||||||||||||||| |||||| |||||||||||||| ||| ||||| ||||||  ||||||  ||||||||||||||     
T  30732758 gaaatgctaacttgtacccttaagatacaagttaataattcaagtataaaaataatttgttggaatgtatgcattgtatttaatatttaactttttaatg 30732857  T
Q  226 aattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgt 280  Q
    |||| |||  ||||||||||| | |||||||||| ||||| ||||||||| ||||    
T  30732858 aattgaatttacaaaattttaaaaaatatttcttcttttgggtttcttaacatgt 30732912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 147 - 280
Target Start/End: Complemental strand, 49447695 - 49447562
Alignment:
Q  147 aagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaatttta 246  Q
    |||| |||| |||||||||||||||||||||||| |||||| ||||||||||||  |||||  ||||||||||| |||  ||| ||| ||||| ||||||    
T  49447695 aagacacaaattaatgattcaaatataaaaataaattattggaatgtgtgcattttatttagtctttaacttttaaatgcattgaatacacaatatttta 49447596  T
Q  247 gagaatatttcttattttgagtttcttaatatgt 280  Q
     |||| |||| || ||||||||||||||| ||||    
T  49447595 aagaacattttttcttttgagtttcttaacatgt 49447562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 151 - 307
Target Start/End: Complemental strand, 37700365 - 37700210
Alignment:
Q  151 tacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagaga 250  Q
    |||| |||||||| |||||||| |||||| ||||||| ||||||||||||| ||||||  || || |||||||| |||| |||||||| |||||||||||    
T  37700365 tacaggttaatgaatcaaatatgaaaatagtttattggaatgtgtgcattatatttaattttaaattttttaatgaattgaatgcacacaattttagaga 37700266  T
Q  251 atatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||| ||||| ||||  ||||||||| || |  |  ||||||||| ||||||||||||    
T  37700265 atagttctt-ttttaggtttcttaacatatggctcaagggcacaggttaacactacc 37700210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 39990856 - 39990757
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| ||||||||| || ||||| |||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||  || |||||||||||    
T  39990856 ggaaatgctaacttgtgccctcaagacacaagttaatgaatcaaagatgaaaataatttattgaaatgtgtgaattacatttaatattaaactttttaat 39990757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 38627727 - 38627835
Alignment:
Q  157 ttaatgattcaaatata-aaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatt 255  Q
    ||||||||||||||||| |||| ||  ||||||||||||||||||  ||||||  |||||||||||||||| ||||||| | ||||||||||| ||| ||    
T  38627727 ttaatgattcaaatatagaaaagaaaatattgaaatgtgtgcattgtatttaatatttaactttttaatcatttaaatgtataaaattttagaaaatgtt 38627826  T
Q  256 tcttatttt 264  Q
    |||| ||||    
T  38627827 tcttctttt 38627835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 12931593 - 12931501
Alignment:
Q  154 aagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttaga 248  Q
    |||||||||| ||||||||| ||||| ||||||| |||||||| |||||||||||  ||| | |||||||| |||||||| | ||||||||||||    
T  12931593 aagttaatgaatcaaatatataaatagtttattggaatgtgtgtattacatttaa--ttttaatttttaatgaattaaatactcaaaattttaga 12931501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 307
Target Start/End: Original strand, 20796416 - 20796552
Alignment:
Q  172 taaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttc 271  Q
    ||||||| |||| ||| |||||||| |||  |||||| || | |||||||||| |||| |||||| |||| | ||||||||||||||| ||||| | |||    
T  20796416 taaaaattattttttggaatgtgtgtattttatttaatctctcactttttaataaattgaatgcataaaagtctagagaatatttcttcttttg-ggttc 20796514  T
Q  272 ttaatatgtaccctaagggcac--aagttaacactacc 307  Q
    |||| |||| | ||||||||||  ||||||||||||||    
T  20796515 ttaacatgtgctctaagggcacataagttaacactacc 20796552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 302
Target Start/End: Complemental strand, 54465431 - 54465304
Alignment:
Q  167 aaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttga 266  Q
    ||||||||||||| ||||||| |||||||||||||| |||||        |||||||| |||| |||| | ||||||||||||||  |||||| |||| |    
T  54465431 aaatataaaaatagtttattgtaatgtgtgcattacttttaa--------tttttaattaattgaatgtataaaattttagagaaagtttcttcttttaa 54465340  T
Q  267 gtttcttaatatgtaccctaagggcacaagttaaca 302  Q
    |||| |||| || ||| ||| |||||||||||||||    
T  54465339 gtttattaacatatactctatgggcacaagttaaca 54465304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 46750209 - 46750141
Alignment:
Q  238 aaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |||||||||||||||||||||| |||| |||||||||| |||| ||||||| |||||||||| |||||||    
T  46750209 aaaattttagagaatatttctt-ttttaagtttcttaacatgtgccctaagagcacaagttatcactacc 46750141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 42760416 - 42760489
Alignment:
Q  183 tattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatattt 256  Q
    ||||| ||||||||||||| |||||| ||||||  ||||||| |||| |||||||||| ||| |||||||||||    
T  42760416 tattggaatgtgtgcattaaatttaatctttaatgttttaatgaattgaatgcacaaagtttaagagaatattt 42760489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 1246585 - 1246687
Alignment:
Q  147 aagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaatttta 246  Q
    |||| |||||||||||| |||||| |||||||| ||||||| |||  ||   ||||||| ||  |||||||||||| | ||||||||||| |||||||||    
T  1246585 aagacacaagttaatgaatcaaatgtaaaaatattttattggaatccgt---ttacattgaatttttaactttttattgaattaaatgcataaaatttta 1246681  T
Q  247 gagaat 252  Q
     |||||    
T  1246682 tagaat 1246687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 49230124 - 49230046
Alignment:
Q  156 gttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgca 236  Q
    |||||||| |||||||||||||  || |||||||||||||| |||| |||||| |||| |||||||||  |||| ||||||    
T  49230124 gttaatgaatcaaatataaaaa--atatattgaaatgtgtgtattatatttaatcttttactttttaaagaattgaatgca 49230046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 36771826 - 36771900
Alignment:
Q  234 gcacaaaat-tttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||||||||| ||||| |||||||| || ||||  ||||||||| ||||   ||||||||||||||||||||||||    
T  36771826 gcacaaaatctttagggaatattttttcttttaggtttcttaacatgtgttctaagggcacaagttaacactacc 36771900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 50360678 - 50360644
Alignment:
Q  269 ttcttaatatgtaccctaagggcacaagttaacac 303  Q
    |||||||||||| ||||||||||||||||||||||    
T  50360678 ttcttaatatgtgccctaagggcacaagttaacac 50360644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 54241286 - 54241327
Alignment:
Q  165 tcaaatataaaaataatttattgaaatgtgtgcattacattt 206  Q
    ||||||||||||||||| |||||||||| |||||||| ||||    
T  54241286 tcaaatataaaaataatatattgaaatgcgtgcattaaattt 54241327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 37311728 - 37311804
Alignment:
Q  226 aattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaaca 302  Q
    |||| ||||||||||||   ||||||| |||||  ||||| ||| ||||| |||| | |||||||||||||||||||    
T  37311728 aattgaatgcacaaaatacaagagaatgtttctacttttgggttgcttaacatgtgctctaagggcacaagttaaca 37311804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 39095973 - 39096021
Alignment:
Q  254 tttcttattttgagtttcttaatatgtaccctaagggcacaagttaaca 302  Q
    ||||| ||||||| ||||||||| ||| ||||||||||||||| |||||    
T  39095973 tttctaattttgaatttcttaatttgtgccctaagggcacaagataaca 39096021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 45054724 - 45054800
Alignment:
Q  226 aattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaaca 302  Q
    |||| |||| ||||||||  || |||| |||||  ||||||||| ||||| |||| |||| ||||||||||||||||    
T  45054724 aattgaatgtacaaaattcaagggaatgtttctacttttgagttgcttaacatgtgcccttagggcacaagttaaca 45054800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 154 - 299
Target Start/End: Complemental strand, 51295848 - 51295704
Alignment:
Q  154 aagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaata 253  Q
    |||||||||| |||||| || ||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| | ||    
T  51295848 aagttaatgaatcaaatgtagaaataatttattggaatgtgtgcattacatttaatctttaactttttaatgaattgaatgcacaaaattttagaaatta 51295749  T
Q  254 tttcttattttgagtttcttaatatgtaccctaagggcacaagtta 299  Q
    ||| || ||||| ||||||||| |||| ||||||||||||||||||    
T  51295748 tttatt-ttttgggtttcttaacatgtgccctaagggcacaagtta 51295704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 182 - 307
Target Start/End: Original strand, 43949118 - 43949243
Alignment:
Q  182 ttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgta 281  Q
    |||||| ||| |||||||||||||||| ||| |||||| |||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||     
T  43949118 ttattggaatatgtgcattacatttaatcttcaactttgtaatgaattgaatgcacaaaattttagagaatatttcttcttttgggtttcttaacatgtg 43949217  T
Q  282 ccctaagggcacaagttaacactacc 307  Q
    |||||||||||||||||| |||||||    
T  43949218 ccctaagggcacaagttagcactacc 43949243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 51050171 - 51050029
Alignment:
Q  164 ttcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattt 263  Q
    |||||||||| ||||||||||||| |||||||| | ||||||||| | |||| ||||||||||||||||||||||| ||||||||||||||||||| |||    
T  51050171 ttcaaatatataaataatttattggaatgtgtgtaatacatttaatcgttaattttttaatcaattaaatgcacaatattttagagaatatttctttttt 51050072  T
Q  264 tgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |  ||||||||| |||| ||| |||| |||||||||||| ||||    
T  51050071 taggtttcttaacatgtgccc-aaggacacaagttaacattacc 51050029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 150 - 307
Target Start/End: Complemental strand, 10881964 - 10881806
Alignment:
Q  150 atacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagag 249  Q
    |||||||||||||  ||||||||| ||||  ||||||  |||||||||||||||||||| |||||| |||||||| |||| |||||| |||||||||| |    
T  10881964 atacaagttaatgcatcaaatatagaaattgtttattagaatgtgtgcattacatttaatctttaattttttaatgaattgaatgcataaaattttaggg 10881865  T
Q  250 aatatttcttattttgagtttcttaatatgtaccctaagggcacaag-ttaacactacc 307  Q
    |||||||||| |||||  |||||| | |||| ||||||||||||||| |||||||||||    
T  10881864 aatatttcttcttttggttttcttgacatgtgccctaagggcacaagtttaacactacc 10881806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 157 - 307
Target Start/End: Complemental strand, 29587251 - 29587101
Alignment:
Q  157 ttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatattt 256  Q
    ||||||||||||||||| |||||| |||||| ||||||||||||  |||||  ||||||||||| |||  ||| |||||||| |||||||||||| ||||    
T  29587251 ttaatgattcaaatatagaaataaattattggaatgtgtgcattttatttagtctttaacttttaaatgcattgaatgcacataattttagagaacattt 29587152  T
Q  257 cttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     || ||||| ||||||||| |||| ||||||||||||||||| ||||||||    
T  29587151 attcttttgggtttcttaacatgtgccctaagggcacaagttcacactacc 29587101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 125 - 299
Target Start/End: Complemental strand, 24466695 - 24466519
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaat-gtgtgcattacatttaaactttaacttttt-a 222  Q
    ||||||| ||||||||| ||  |||| |||||||||| | ||||||| | ||||| |||||| |||  ||||||||||||||||| |||||||||||| |    
T  24466695 ggaaatgctaacttgtgaccttaagacacaagttaataaatcaaataaagaaatagtttattaaaaacgtgtgcattacatttaatctttaactttttta 24466596  T
Q  223 atcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagtta 299  Q
    || |||| |||| |||||||||||||||||||||||| |||||| ||| |||| |||| |||||||  |||||||||    
T  24466595 attaattgaatgtacaaaattttagagaatatttctttttttgaattttttaacatgtgccctaagaacacaagtta 24466519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 127 - 307
Target Start/End: Complemental strand, 34711071 - 34710891
Alignment:
Q  127 aaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatca 226  Q
    ||||| ||||||||| ||  | || ||||||||||||  |||||||| |||||  | ||||||||||||| ||||||||||| ||||| ||||||||| |    
T  34711071 aaatgttaacttgtgcccttatgacacaagttaatgaaacaaatatagaaatagctcattgaaatgtgtgtattacatttaatctttagctttttaatga 34710972  T
Q  227 attaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     || |||||||| ||||||| | |||| ||||| ||||  | ||||||| ||||||||||||| |||||||||||||||||    
T  34710971 gttgaatgcacacaattttataaaatacttcttcttttaggattcttaacatgtaccctaaggacacaagttaacactacc 34710891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 275
Target Start/End: Original strand, 39275846 - 39275969
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||||||  |||||| ||||||||||| |||   || |||||| ||||||||||||||    
T  39275846 acaagttaatgattcaaacatataaataaattattgaaatgtgtgcattttatttaatctttaacttttaaatgctttgaatgcataaaattttagagaa 39275945  T
Q  252 tatttcttattttgagtttcttaa 275  Q
    |||||||| ||||| |||||||||    
T  39275946 tatttcttcttttgggtttcttaa 39275969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 147 - 275
Target Start/End: Complemental strand, 15279141 - 15279012
Alignment:
Q  147 aagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaatt-tt 245  Q
    |||| |||||||||||||||||||||| ||||||||||||  |||||||||||| |||||||  |||||||||||||| |||| ||||||||||||| |     
T  15279141 aagacacaagttaatgattcaaatatagaaataatttattagaatgtgtgcattgcatttaatatttaactttttaataaattgaatgcacaaaattata 15279042  T
Q  246 agagaatatttcttattttgagtttcttaa 275  Q
    | | |||||||||| | |||||||||||||    
T  15279041 aaaaaatatttcttctcttgagtttcttaa 15279012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 33828205 - 33828101
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||| ||||||||| ||||| ||||||| |||||||| ||||||| ||| ||||||||||||||| |||| |||||| ||||||||||||||    
T  33828205 acaagttaatgaatcaaatatataaatagtttattggaatgtgtgtattacatctaatctttaactttttaataaattgaatgcataaaattttagagaa 33828106  T
Q  252 tattt 256  Q
    |||||    
T  33828105 tattt 33828101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 152 - 256
Target Start/End: Original strand, 33839760 - 33839864
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    |||||||||||| ||||||||| ||||| ||||||| |||||||| ||||||| ||| ||||||||||||||| |||| |||||| ||||||||||||||    
T  33839760 acaagttaatgaatcaaatatataaatagtttattggaatgtgtgtattacatctaatctttaactttttaataaattgaatgcataaaattttagagaa 33839859  T
Q  252 tattt 256  Q
    |||||    
T  33839860 tattt 33839864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 151 - 306
Target Start/End: Complemental strand, 42549322 - 42549167
Alignment:
Q  151 tacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagaga 250  Q
    |||||||||||||||||||||||||||||| | |||| |||||||  |||  |||||  ||||||||||| |||  ||| |||| | |||||||||||||    
T  42549322 tacaagttaatgattcaaatataaaaataaataattggaatgtgtatattttatttagtctttaacttttaaatgcattgaatgtataaaattttagaga 42549223  T
Q  251 atatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactac 306  Q
    ||||||||| ||||  ||||||||| || | |||||| ||||||| ||||||||||    
T  42549222 atatttcttcttttaggtttcttaacatatgccctaaaggcacaaattaacactac 42549167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 44595799 - 44595720
Alignment:
Q  185 ttgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttatttt 264  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||| ||||    
T  44595799 ttgaaatgtgtgcattacatttaaactttaactttttaatgaattgaatgcacaaaattttaaagaatatttcttctttt 44595720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 280
Target Start/End: Complemental strand, 18023911 - 18023788
Alignment:
Q  157 ttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatattt 256  Q
    ||||||||||||||||| ||||||||||||||||| |||||| | || |||| ||||||||||||||| |||| |||| | |||||||| || |||||||    
T  18023911 ttaatgattcaaatatagaaataatttattgaaatatgtgcactgcaattaatctttaactttttaatgaattgaatgaataaaatttttgaaaatattt 18023812  T
Q  257 cttattttgagtttcttaatatgt 280  Q
    ||| | |||| |||||||| ||||    
T  18023811 cttctcttgaatttcttaacatgt 18023788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 307
Target Start/End: Original strand, 15401690 - 15401830
Alignment:
Q  167 aaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttga 266  Q
    ||||||||||||||| ||||| |||| || ||||| ||||||  |||||  |||||||||||| |||||||||| ||| |||||||| ||||| ||||      
T  15401690 aaatataaaaataatgtattggaatgcgtacattaaatttaatatttaatgttttaatcaattgaatgcacaaagtttaagagaataattctttttttag 15401789  T
Q  267 gtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     |||||||| |||| |||||| | |||||||||| ||||||    
T  15401790 atttcttaacatgtgccctaaagacacaagttaatactacc 15401830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 171 - 307
Target Start/End: Complemental strand, 18436427 - 18436291
Alignment:
Q  171 ataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagttt 270  Q
    ||||||||||| |||   ||||||| ||||| |||||| ||||||  ||||||| |||| ||||| |||| ||| |   |||||||||| |||||  |||    
T  18436427 ataaaaataatgtatcagaatgtgtacattaaatttaatctttaatgttttaatgaattgaatgctcaaagtttaaagaaatatttctttttttggattt 18436328  T
Q  271 cttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  18436327 cttaacatgtgccctaagggcacaagttaacactacc 18436291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 31262410 - 31262532
Alignment:
Q  178 taatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaata 277  Q
    ||||| |||| ||||||| ||||||||||||  |||| ||||||||| | || |||| ||||||||| | | |||||||||| ||||  ||||||||| |    
T  31262410 taattcattgtaatgtgtacattacatttaatatttagctttttaatgagttgaatgtacaaaatttgataaaatatttctttttttaggtttcttaaca 31262509  T
Q  278 tgtaccctaagggcacaagttaa 300  Q
    ||| |||| |||||||| |||||    
T  31262510 tgtgccctgagggcacaggttaa 31262532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 36313615 - 36313704
Alignment:
Q  210 ctttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagtta 299  Q
    ||||||||||||||| |||| ||| |||||||||||| | |||||||||| |||||| |||||||| ||||||  |||| | ||||||||    
T  36313615 ctttaactttttaatgaattgaattcacaaaattttaaaaaatatttcttcttttgactttcttaacatgtactttaagagtacaagtta 36313704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 19569130 - 19569048
Alignment:
Q  175 aaataatttattgaaatgtgtgcattacatttaaacttt-aactttttaatcaattaaatgcacaaaattttagagaatattt 256  Q
    ||||||||||||||||  |||| ||| |||| || |||| ||||||||||| |||| |||||||||||||||| |||||||||    
T  19569130 aaataatttattgaaaaatgtgtatttcattaaatcttttaactttttaataaattgaatgcacaaaattttatagaatattt 19569048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 46587681 - 46587723
Alignment:
Q  151 tacaagttaatgattcaaatataaaaataatttattgaaatgt 193  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  46587681 tacaagttagtgattcaaatataaaaataatttattgaaatgt 46587723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 46587789 - 46587870
Alignment:
Q  221 taatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacacta 305  Q
    |||||||||||||||||||||||||||| |||||   || |||| |||||||||| || |  ||||||||||||| |||||||||    
T  46587789 taatcaattaaatgcacaaaattttagaaaatat---ttgtttttagtttcttaacatatgtcctaagggcacaaattaacacta 46587870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 39412494 - 39412437
Alignment:
Q  250 aatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |||||||||| ||||||||||||||| |||| ||||||| ||||||||||||| ||||    
T  39412494 aatatttcttcttttgagtttcttaacatgtgccctaagagcacaagttaacattacc 39412437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 11248759 - 11248717
Alignment:
Q  211 tttaactttttaatcaattaaatgcacaaaattttagagaata 253  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  11248759 tttaactttttaatcatttaaatgcacaaaattttagaaaata 11248717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 17354394 - 17354521
Alignment:
Q  180 atttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatg 279  Q
    |||||||| |||||| ||||  ||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||||| |||    
T  17354394 atttattggaatgtgggcatatcatttaatctttaactttttaatcaattaaatgcataaaattttatagaatatttcttcttttgggtttcttaacatg 17354493  T
Q  280 taccctaagggcacaagttaacactacc 307  Q
    | ||||||||||||||||||||||||||    
T  17354494 tgccctaagggcacaagttaacactacc 17354521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 153 - 307
Target Start/End: Complemental strand, 43252005 - 43251852
Alignment:
Q  153 caagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaat 252  Q
    ||||||||||||| ||||||| ||||||||||||  ||||||||  |||||||||| |||||| |||||||||||||||||||| ||||||||| | |||    
T  43252005 caagttaatgatttaaatatagaaataatttattagaatgtgtgttttacatttaatctttaattttttaatcaattaaatgcataaaattttaaataat 43251906  T
Q  253 atttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||||||| |||| |||||||||| ||||   ||||||||||||||||| ||||||    
T  43251905 atttctt-ttttaagtttcttaacatgtgttctaagggcacaagttaagactacc 43251852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 152 - 307
Target Start/End: Complemental strand, 40019891 - 40019737
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaa 251  Q
    ||||||||||||| |||||||| ||| || ||||||||||||||||||| |||||||  |||||||||||||||| |||||| ||||||| |||||||||    
T  40019891 acaagttaatgat-caaatatagaaaaaacttattgaaatgtgtgcattgcatttaatatttaactttttaatcatttaaatacacaaaagtttagagaa 40019793  T
Q  252 tatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |  ||||| ||||  ||||||||| |||| || ||| |||||||||||||||||||    
T  40019792 tgcttcttcttttaggtttcttaacatgtgccataaaggcacaagttaacactacc 40019737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 23358423 - 23358605
Alignment:
Q  125 ggaaatggtaacttgtgtcccc-aagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaa 223  Q
    ||||||| |||||||||||  | ||| ||||||||||||| |||| |||||||||| |||||| ||||| ||| |||| |||||| ||||||| |||| |    
T  23358423 ggaaatgctaacttgtgtcttctaaggtacaagttaatgaatcaattataaaaatattttatttaaatgcgtgtattatatttaatctttaaccttttca 23358522  T
Q  224 tcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactac 306  Q
    | |||| |||||||| ||||||| | |||||||||| |||| ||||| |||| ||||  ||||||||||||||||||||||||    
T  23358523 tgaattgaatgcacacaattttaaaaaatatttcttcttttaagttttttaacatgtgtcctaagggcacaagttaacactac 23358605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 151 - 316
Target Start/End: Original strand, 37828343 - 37828509
Alignment:
Q  151 tacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaacttt-aactttttaatcaattaaatgcacaaaattttagag 249  Q
    ||||||||||| | ||||||||| ||||| ||||||| |||| ||| |||| |||||| |||| ||||||||||| |||| |||||||||||||| ||||    
T  37828343 tacaagttaataaatcaaatatagaaatagtttattggaatgcgtgtattaaatttaatcttttaactttttaataaattgaatgcacaaaatttaagag 37828442  T
Q  250 aatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactaccatatcttta 316  Q
    |||||||||| ||||  ||||||||| || | ||| |||||||||||||| || |||||||| ||||    
T  37828443 aatatttcttcttttaggtttcttaacatatgccccaagggcacaagttagcattaccatattttta 37828509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 307
Target Start/End: Complemental strand, 48634072 - 48633898
Alignment:
Q  133 taacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaa 232  Q
    ||||||||| ||  |||| |||||||||| | | ||||||||||||| ||||||| ||||||| ||||   ||||  ||||||||||||||| |||| ||    
T  48634072 taacttgtgcccttaagacacaagttaataaataaaatataaaaatagtttattggaatgtgtacattgtctttagtctttaactttttaatgaattgaa 48633973  T
Q  233 tgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |||| ||||||||||||||  ||| || ||||  ||||||||| |||| ||||||||||||||||||||||||||    
T  48633972 tgcataaaattttagagaaatttttttcttttaggtttcttaacatgtgccctaagggcacaagttaacactacc 48633898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 212 - 307
Target Start/End: Complemental strand, 42306344 - 42306249
Alignment:
Q  212 ttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||||||||||||| |||| |||||||||||||||||||| |||||||| ||||||||||||||| |||| | ||||||||||||||||||||||||    
T  42306344 ttaactttttaatgaattgaatgcacaaaattttagagagtatttcttcttttgagtttcttaacatgtgctctaagggcacaagttaacactacc 42306249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 307
Target Start/End: Complemental strand, 36827893 - 36827787
Alignment:
Q  201 acatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaa 300  Q
    ||||||||  |||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||  ||||||||| |||| |||||||||||||||||||    
T  36827893 acatttaatttttaacttattaatgaattgaatgcacaaaattttagagaatatttcttcttttaggtttcttaacatgtgccctaagggcacaagttaa 36827794  T
Q  301 cactacc 307  Q
    |||||||    
T  36827793 cactacc 36827787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 165 - 280
Target Start/End: Complemental strand, 20009770 - 20009656
Alignment:
Q  165 tcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttatttt 264  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| || |||| |||||||||||||||||| |||||||||| ||||    
T  20009770 tcaaatatagaaataatttattgaaatgtgt-cattacatttaatctgtaacttttttataaattgaatgcacaaaattttagaaaatatttcttctttt 20009672  T
Q  265 gagtttcttaatatgt 280  Q
    || ||| |||| ||||    
T  20009671 gaattttttaacatgt 20009656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 127 - 307
Target Start/End: Original strand, 25971417 - 25971592
Alignment:
Q  127 aaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatca 226  Q
    ||||| |||||||||||   ||| ||||| |||||   ||||||||||||||  ||||||| ||||  ||||||||||||||  ||||| |||||||| |    
T  25971417 aaatgttaacttgtgtctttaaggtacaaattaatacatcaaatataaaaattgtttattggaatgcatgcattacatttaatatttaattttttaatga 25971516  T
Q  227 attaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||| ||||||||||||||||| ||||||||||| |||||| |||||||| |||    |||||| |||||||||||||||||    
T  25971517 attgaatgcacaaaattttagtgaatatttctttttttga-tttcttaacatg----ctaaggacacaagttaacactacc 25971592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 307
Target Start/End: Original strand, 23363754 - 23363902
Alignment:
Q  157 ttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatattt 256  Q
    ||||||| |||| |||||||||| ||||||| |||| ||| ||||||||| | ||||||| ||||||| |||| |||| ||||||||||| | ||||||     
T  23363754 ttaatgaatcaattataaaaatattttattggaatgcgtgtattacattttatctttaaccttttaataaattgaatgtacaaaattttaaaaaatatt- 23363852  T
Q  257 cttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
     || |||| |||||||||| ||||  |||||||| ||||||||||||||||    
T  23363853 -ttttttttagtttcttaacatgtgtcctaagggtacaagttaacactacc 23363902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 165 - 307
Target Start/End: Complemental strand, 31289584 - 31289442
Alignment:
Q  165 tcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttatttt 264  Q
    |||||| |||||||||| ||||| |||| |||||| | |||||| ||||||  ||||||| |||| |||||||||| ||| ||| |||||||||| ||||    
T  31289584 tcaaatgtaaaaataatatattggaatgcgtgcataaaatttaatctttaatgttttaatgaattgaatgcacaaagtttaagataatatttcttttttt 31289485  T
Q  265 gagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    || |||||||| |||| |  ||| |||||||||||||||||||    
T  31289484 gaatttcttaacatgtgctataaaggcacaagttaacactacc 31289442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 147 - 307
Target Start/End: Complemental strand, 3767269 - 3767108
Alignment:
Q  147 aagatacaagttaatgattcaaatataaaaa-taatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaatttt 245  Q
    ||||||||||||||||| |||||| |||||| |||||||||  ||| | ||||||||||||||  |||||||||||||| |||||||| ||   ||||||    
T  3767269 aagatacaagttaatgaatcaaatgtaaaaaataatttatttgaatatatgcattacatttaatatttaactttttaataaattaaatacatcgaatttt 3767170  T
Q  246 agagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    ||| ||||||| || ||||  ||||||||| |||| || ||| ||||||| ||| |||||||    
T  3767169 agaaaatatttattcttttaggtttcttaacatgtgccataaaggcacaacttagcactacc 3767108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 48047039 - 48046893
Alignment:
Q  126 gaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatc 225  Q
    |||||| ||||||||| ||  |||  |||||||||| | ||||||||| |||| | |||||| ||||||||||||||||||||  |||| | |||||||     
T  48047039 gaaatgctaacttgtgcccttaaggcacaagttaataaatcaaatatagaaattaattattggaatgtgtgcattacatttaatatttagccttttaatg 48046940  T
Q  226 aattaaatgcacaaaattttagagaatatttcttattttgagtttctta 274  Q
    ||||||||||||  |||||||||||| ||||||| ||||| ||||||||    
T  48046939 aattaaatgcac--aattttagagaaaatttcttcttttgggtttctta 48046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 311
Target Start/End: Original strand, 25594582 - 25594720
Alignment:
Q  172 taaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttc 271  Q
    |||||||||| ||||  ||||||||||||| |||||| ||||||  ||||||| |||| |||||||||||||| ||  ||||||| || |||| | ||||    
T  25594582 taaaaataatgtattagaatgtgtgcattaaatttaatctttaatattttaataaattgaatgcacaaaatttaaggaaatattt-ttttttttaatttc 25594680  T
Q  272 ttaatatgtaccctaagggcacaagttaacactaccatat 311  Q
    |||| || |  ||||| |||||||||||||| ||||||||    
T  25594681 ttaacatatgtcctaaaggcacaagttaacaataccatat 25594720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 299
Target Start/End: Complemental strand, 45671846 - 45671712
Alignment:
Q  165 tcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttatt-t 263  Q
    ||||||||| |||||| |||||||||| |||| ||| ||||||   |||||||||||||| |||| ||| |||||||||||| | || ||||||| || |    
T  45671846 tcaaatatagaaataacttattgaaatatgtgtattgcatttattatttaactttttaattaatt-aattcacaaaattttaaaaaacatttcttcttat 45671748  T
Q  264 tgagtttcttaatatgtaccctaagggcacaagtta 299  Q
    | |||||||||| ||||| ||||||||| |||||||    
T  45671747 taagtttcttaacatgtatcctaagggcgcaagtta 45671712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 42306663 - 42306573
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaa 215  Q
    ||||||| |||||| || || ||||  ||||||||| |||| ||||||| |||||||||||||||||| ||||||| ||||||| ||||||    
T  42306663 ggaaatgctaacttctgccctcaaggcacaagttaacgatttaaatatagaaataatttattgaaatgcgtgcattgcatttaatctttaa 42306573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 212 - 305
Target Start/End: Complemental strand, 46479831 - 46479738
Alignment:
Q  212 ttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacacta 305  Q
    ||||||||||||||| ||||||||||||||||||| | || |||||||||||| | |||||||| || | |  ||| | |||||||||||||||    
T  46479831 ttaactttttaatcatttaaatgcacaaaattttaaaaaaaatttcttattttaaatttcttaacatatccattaaagacacaagttaacacta 46479738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 48339746 - 48339802
Alignment:
Q  193 tgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagag 249  Q
    |||||||||||||||| |||||| |||||||| |||| |||| ||||||||||||||    
T  48339746 tgtgcattacatttaatctttaattttttaatgaattgaatgaacaaaattttagag 48339802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 3398976 - 3398891
Alignment:
Q  147 aagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaat 233  Q
    |||| |||||||||| | ||||||||||||||| ||||||| | |||||| |||| |||| || |||||||||||||| ||| ||||    
T  3398976 aagacacaagttaataaatcaaatataaaaatagtttattgcattgtgtgtattaaattt-aattttaactttttaatgaataaaat 3398891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 11885528 - 11885442
Alignment:
Q  184 attgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagttt 270  Q
    |||| |||||||  ||||||||||| |||||  |||||||| | || |||| ||||||||||| | |||||||||| ||||||||||    
T  11885528 attggaatgtgtaaattacatttaatctttagttttttaatgagttgaatgtacaaaattttataaaatatttcttcttttgagttt 11885442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 43951997 - 43951892
Alignment:
Q  166 caaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttg 265  Q
    ||||| || ||||||| ||||| ||||||||||||| ||||||  |||||  ||||||| |||| |||||| ||||||  |  ||||||||||| |||||    
T  43951997 caaatgtagaaataatgtattggaatgtgtgcattaaatttaatatttaatattttaatgaattgaatgcataaaattaaaatgaatatttctttttttg 43951898  T
Q  266 agtttc 271  Q
    | ||||    
T  43951897 aatttc 43951892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 676267 - 676343
Alignment:
Q  183 tattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttctt 259  Q
    ||||| |||| || ||||| |||||| ||||||  ||||||| |||| |||||||||||||| || |||||||||||    
T  676267 tattggaatgcgtacattaaatttaatctttaatgttttaatgaattgaatgcacaaaatttaagggaatatttctt 676343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 39983055 - 39983126
Alignment:
Q  147 aagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactt 218  Q
    |||| |||||||||||||| ||||||| ||||||||||||  |||| ||| |||  |||||| |||||||||    
T  39983055 aagacacaagttaatgattaaaatatagaaataatttattagaatgcgtgtattctatttaatctttaactt 39983126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 32546828 - 32546870
Alignment:
Q  260 attttgagtttcttaatatgtaccctaagggcacaagttaaca 302  Q
    |||||| ||| |||||||||| |||||||||||||||||||||    
T  32546828 attttgggttccttaatatgtgccctaagggcacaagttaaca 32546870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 32903088 - 32903142
Alignment:
Q  251 atatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacacta 305  Q
    ||||||||| |||||  |||||||| |||||  ||||||||||||||||||||||    
T  32903088 atatttcttcttttggttttcttaacatgtattctaagggcacaagttaacacta 32903142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 306
Target Start/End: Original strand, 3622276 - 3622361
Alignment:
Q  221 taatcaattaaatgcacaaaattttagagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactac 306  Q
    |||| |||| |||||||||||||||| | |||||||||| |||| | |||||||| || | | |||||| ||||| |||| |||||    
T  3622276 taatgaattgaatgcacaaaattttaaaaaatatttcttcttttaaatttcttaacatatgctctaaggacacaaattaatactac 3622361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 39983188 - 39983244
Alignment:
Q  246 agagaatatttcttattttgagtttcttaatatgtaccctaagggcacaagttaaca 302  Q
    ||||| |||||||| ||||| |||| |||| |||| |||| ||||||||||||||||    
T  39983188 agagagtatttcttgttttgggttttttaacatgtgcccttagggcacaagttaaca 39983244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 175 - 294
Target Start/End: Complemental strand, 50712 - 50593
Alignment:
Q  175 aaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttctta 274  Q
    ||||||||||||| ||||||||||||  |||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  50712 aaataatttattggaatgtgtgcattgtatttaatctctaagtttttaatcaattaaatgcacaaaattttagagaatatttcttcttttgggtttctta 50613  T
Q  275 atatgtaccctaagggcaca 294  Q
    | |||| || ||||||||||    
T  50612 acatgtgccttaagggcaca 50593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 154 - 307
Target Start/End: Original strand, 37198 - 37349
Alignment:
Q  154 aagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaata 253  Q
    |||||| ||| ||||| ||| |||||  |||||| |||||||||||||||||| || |||||||||||||  |||| |||||||||||||||| | ||||    
T  37198 aagttactgaatcaaaaatagaaataggttattggaatgtgtgcattacattt-aattttaactttttaaagaattgaatgcacaaaatttta-aaaata 37295  T
Q  254 tttcttattttgagtttcttaatatgtaccctaagggcacaagttaacactacc 307  Q
    |||||| ||||  |||| |||| |||| ||||||| ||||||| ||||||||||    
T  37296 tttcttcttttaggttttttaacatgtgccctaagagcacaagataacactacc 37349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 37844 - 37802
Alignment:
Q  182 ttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    |||||||||||||||||| | |||||| |||||||||||||||    
T  37844 ttattgaaatgtgtgcatcatatttaatctttaactttttaat 37802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 125 - 264
Target Start/End: Original strand, 66115 - 66254
Alignment:
Q  125 ggaaatggtaacttgtgtccccaagatacaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaat 224  Q
    ||||||| |||| ||||||   |||| |||||||||||| |||||| ||  |||| ||||||| |||   ||||||||||||||  |||||||||||| |    
T  66115 ggaaatgttaacgtgtgtctttaagacacaagttaatgaatcaaatgtaggaatattttattggaattcatgcattacatttaatttttaactttttagt 66214  T
Q  225 caattaaatgcacaaaattttagagaatatttcttatttt 264  Q
     |||| ||||||||||||||||||||||||||||| ||||    
T  66215 gaattgaatgcacaaaattttagagaatatttcttctttt 66254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 244
Target Start/End: Complemental strand, 122574 - 122482
Alignment:
Q  152 acaagttaatgattcaaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattt 244  Q
    |||||||||||| ||||||||||||||| ||||||| || || || ||||||||||| |||||| ||||||||||||| |||||||| |||||    
T  122574 acaagttaatgaatcaaatataaaaatattttattggaacgtatgtattacatttaatctttaattttttaatcaattgaatgcacataattt 122482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 307
Target Start/End: Original strand, 223669 - 223803
Alignment:
Q  173 aaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttgagtttct 272  Q
    ||||| || |||||| |||||||| ||| |||| ||  ||||| |||||||||||||||||||| ||||||||| | |||||||||| ||||   ||| |    
T  223669 aaaaaaaacttattgcaatgtgtgtattgcattaaatgtttaaatttttaatcaattaaatgcataaaattttaaaaaatatttcttcttttagattttt 223768  T
Q  273 taatatgtaccctaagggcacaagttaacactacc 307  Q
    |||||||  |||||| |||| ||||||||||||||    
T  223769 taatatgggccctaacggcataagttaacactacc 223803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 16852 - 16920
Alignment:
Q  176 aataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattt 244  Q
    ||||||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||||| |||||||    
T  16852 aataatttattcaaatgtgtgcattgcatttaatatttaactttttaatcatttaaatgcataaaattt 16920  T

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Target: scaffold0119 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 22942 - 22845
Alignment:
Q  166 caaatataaaaataatttattgaaatgtgtgcattacatttaaactttaactttttaatcaattaaatgcacaaaattttagagaatatttcttattttg 265  Q
    |||||||| ||||||||||||| || ||| |||| |||||||| ||||||||||||||| ||||   |||||||||||||| | |||||||||| |||||    
T  22942 caaatatataaataatttattggaacgtgcgcat-acatttaatctttaactttttaataaatt-tttgcacaaaattttataaaatatttctttttttg 22845  T

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