View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12595_low_31 (Length: 355)
Name: NF12595_low_31
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 37968832 - 37968484
Alignment:
| Q |
1 |
ggacagccaaagaaaatatgccgcgagtcctccaccaagctctcacacatcacacgcaagtttggacaagagactcctcgaattcgaaggttaataagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37968832 |
ggacagccaaagaaaatatgccgcgagtcctccaccaagctcccacacatcacacacaagtttggacaagagactcctcgaattcgaaggttaataagac |
37968733 |
T |
|
| Q |
101 |
gcgttaaaatgtatctaacagccctccaacaaaaatgtttcacgtagaggcaataatccggcgtttctcggctgatggtgactatactctaatcggctcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37968732 |
gcgttaaaatgtatctaacagccctccaacaaaaatgtttcacgtagacgcaataatccggcgtttctcggctgctggtgactatactctaatcggctcc |
37968633 |
T |
|
| Q |
201 |
aacttggattcaatttatgttcatcgttgaattcatgcaaagtttataagctgttctgacagttttgtcatcatcagccaagaaacgccagattattgcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37968632 |
aacttggattcaatttatgttcatcgttgaattcatgcaaagtttataagctgttctgacagttttgtcatcatcagccaagaaacgccagattattgcc |
37968533 |
T |
|
| Q |
301 |
tctgttttagcatattatgtgtcagcgtgatcttgcacattcatctcac |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37968532 |
tctgttttagcatattatgtgtcagcgtgatcttgcacattcatttcac |
37968484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University