View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12595_low_32 (Length: 342)
Name: NF12595_low_32
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 46451809 - 46451494
Alignment:
| Q |
18 |
cattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46451809 |
cattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgc |
46451710 |
T |
|
| Q |
118 |
catattttcatcattattatttattaaaaaggtctcataaattttgacttaatttagtactttgcaaaattaat-ttctttcacataattaagaacaaac |
216 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
46451709 |
catattatcatcatcattatttattaaaagggtctcataaattttgaccaaatttagtaatttgcaaaattaatcttctttcacataattaagaaaaaat |
46451610 |
T |
|
| Q |
217 |
aaagataattttatttactagtatgctcacctttggtgaacgagtataagttggttgtggttgtggtggtggagttggtgctgatgttggtgtaattggg |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46451609 |
aaagataattttatttactactatgctcacctttggtgaacgagtataagttggttgtggttgtggtggtggagttggtgctgatgttggtgtaattggg |
46451510 |
T |
|
| Q |
317 |
tctacagccacctttg |
332 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
46451509 |
tctacaggcacctttg |
46451494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 46344747 - 46345050
Alignment:
| Q |
18 |
cattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46344747 |
cattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgc |
46344846 |
T |
|
| Q |
118 |
catattttcatcattattatttattaaaaaggtctcataaattttgacttaatttagtactttgcaaaattaatttctttcacataattaagaacaaaca |
217 |
Q |
| |
|
||||||||||| |||| | ||| ||||| || || ||||||||| | || |||| |||||||| || ||| |||| |||| |||| ||| ||||| |
|
|
| T |
46344847 |
catattttcattatta-aaattaataaaagggcctaataaattttaaacaaaattagcactttgcataactaa--tcttgcacacaattcagagaaaaca |
46344943 |
T |
|
| Q |
218 |
aagataattt-tatttactagtatgctcacctttggtgaacgagtataagttggttgtggttgtggtggtggagttggtgctgatgttggtgtaattggg |
316 |
Q |
| |
|
||||| |||| | ||| ||| ||||||||||||||||| ||||||||| | || |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
46344944 |
aagatgatttatttttgctactatgctcacctttggtgcacgagtatagg------ctgattgtggtggtggagttggtgctgatggtgttgtaattggg |
46345037 |
T |
|
| Q |
317 |
tctacagccacct |
329 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
46345038 |
tctagaggcacct |
46345050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 46462777 - 46462471
Alignment:
| Q |
18 |
cattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46462777 |
cattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaattttgtgctcatctgc |
46462678 |
T |
|
| Q |
118 |
catattttcatcattattatttattaaaaaggtctcataaattttgacttaatttagtactttgcaaaattaatttctttcacataattaagaacaaaca |
217 |
Q |
| |
|
||||||||||| |||| | ||| ||||| || || ||||||||| | || |||| |||||||| || ||| |||| |||| |||| ||| ||||| |
|
|
| T |
46462677 |
catattttcattatta-aaattaataaaagggcctaataaattttaaacaaaattagcactttgcataactaa--tcttgcacacaattcagagaaaaca |
46462581 |
T |
|
| Q |
218 |
aagataattt-tatttactagtatgctcacctttggtgaacgagtataagttggttgtggttgtggtggtggagttggtgctgatgttggtgtaattggg |
316 |
Q |
| |
|
||||| |||| | ||| ||| ||||||||||||||||| ||||||||| | || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46462580 |
aagatgatttatttttgctactatgctcacctttggtgcacgagtatagg------ctgattgtggtggtggagttggtgctgatgttggtgtaattgaa |
46462487 |
T |
|
| Q |
317 |
tctacagccacctttg |
332 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
46462486 |
tctacaggtacctttg |
46462471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 46471404 - 46471257
Alignment:
| Q |
18 |
cattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgc |
117 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46471404 |
cattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggtgctgccccaccaaaagccatcaaatccgaaaactttgtgcttatctgc |
46471305 |
T |
|
| Q |
118 |
catattttcatcattattatttattaaaaaggtctcataaattttgac |
165 |
Q |
| |
|
||| | | ||||| |||| | ||| | |||||||||| ||||||||| |
|
|
| T |
46471304 |
cattatataatcatcattaatcatttagaaggtctcattaattttgac |
46471257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 46466199 - 46466097
Alignment:
| Q |
18 |
cattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggcccaccaaaagccatcaaatccgaaaactttgtgctcatctgc |
117 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46466199 |
cattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggtgctgccccaccaaaagccatcaaatccgaaaactttgtgcttatctgc |
46466100 |
T |
|
| Q |
118 |
cat |
120 |
Q |
| |
|
||| |
|
|
| T |
46466099 |
cat |
46466097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University