View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_33 (Length: 339)
Name: NF12595_low_33
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 36147248 - 36146940
Alignment:
| Q |
15 |
cactgaatagctgaagcatgactacgatatattgcnnnnnnngaacaacctgtacgtgtatctacataaactcctttttactcatgtaaccaaaattatc |
114 |
Q |
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| T |
36147248 |
cactgaatagctgaagcatgactacgatatattgcaaaaaaagaacaacctgtacgtgtatctacataaactcctttttactcatgtaaccaaaattatc |
36147149 |
T |
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| Q |
115 |
taattctaatgatgtgatttttatgccaataataatgtgattttatgtacatatatattataatcataatatattacggatagtaaaacttaagacttgc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36147148 |
taattctaatgatgtgatttttatgccaataataatgtgattttatgtacatatatattataatcataatatattacggatagtaaaacttaagacttgc |
36147049 |
T |
|
| Q |
215 |
atacacatataatagtagtatataataatatgacattttctcctgatattttcattatgtatgcagaaatgtagaaatattgcattttctcttatattta |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36147048 |
atacacatataatagtagtatataataatatgacattttctcctgatattttcattatgtatgcagaaatgtagaaatattgcattttctcttatattta |
36146949 |
T |
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| Q |
315 |
ttttatttt |
323 |
Q |
| |
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||||||||| |
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| T |
36146948 |
ttttatttt |
36146940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 36080133 - 36080026
Alignment:
| Q |
31 |
catgactacgatatattgcnnnnnnngaacaacctgtacgtgtatctacataaact--cctttttactcatgtaaccaaaattatctaattctaatgatg |
128 |
Q |
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| T |
36080133 |
catgactacgatatattgcaaaaattgaacaacttgtgcatctatctacataaaatgatttttttactcgtgtaaccaaaattatctaattctaatgatg |
36080034 |
T |
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| Q |
129 |
tgattttt |
136 |
Q |
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|||||||| |
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| T |
36080033 |
tgattttt |
36080026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 36079916 - 36079865
Alignment:
| Q |
167 |
atatattataatcataatatattacggatagtaaaacttaagacttgcatac |
218 |
Q |
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| T |
36079916 |
atatattataatcataatatatgacaaatagtaaaacttaagacttgcatac |
36079865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 36075708 - 36075673
Alignment:
| Q |
237 |
taataatatgacattttctcctgatattttcattat |
272 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
36075708 |
taataatatgacattttctcctgatattttcattat |
36075673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 188
Target Start/End: Original strand, 26529738 - 26529875
Alignment:
| Q |
60 |
caacctgtacgtgtatctacataaactccttttt-actcatgtaaccaaaattatctaattctaatgatgtga-tttttatgcc---------aataata |
148 |
Q |
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|||| |||| ||||||||| ||||| | |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| |
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| T |
26529738 |
caacttgtatgtgtatctatataaaatgctttttcactcatgtaaccaaaattatataattctaatgatgtgattttttatgccgttcaaaagaataata |
26529837 |
T |
|
| Q |
149 |
atgtgattttatgtacatatatattataatcataatatat |
188 |
Q |
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|||||||||||||||| ||||||| |||||||||||||| |
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| T |
26529838 |
atgtgattttatgtac--atatattttaatcataatatat |
26529875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 241 - 321
Target Start/End: Original strand, 26529972 - 26530044
Alignment:
| Q |
241 |
aatatgacattttctcctgatattttcattatgtatgcagaaatgtagaaatattgcattttctcttatatttattttatt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26529972 |
aatatgacattttctcctgatattttcattatgtatgc--------agaaatattgcattttctcttatatttattttatt |
26530044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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