View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_34 (Length: 338)
Name: NF12595_low_34
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 2900365 - 2900052
Alignment:
| Q |
11 |
cagagagcattaacactgtaaattgcaacctaacataataaataccacaaaaggataacaaagacaaaaaagagtataagaacaaaaactgcaacttcca |
110 |
Q |
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| T |
2900365 |
cagagagcattaacactgtaaattgcaacctaacataataaataccacaaaaggataacaaagacaaaaaagagtataagaacaaaaactgcaacttcca |
2900266 |
T |
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| Q |
111 |
ataatagttaaaattggtacaaaaaatatttcaatagcccttgagccttaaccaaatcaaatgtcacagttaagaaactatattactaatgatttcaaat |
210 |
Q |
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| T |
2900265 |
ataatagttaaaattggtagaacaaatatttcaatagcccttgagccttaaccaaatcaaatgtcacagttaagaaactatattactaatgatttcaaat |
2900166 |
T |
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| Q |
211 |
taaagcaacgtatgtacctcttcatctgtccagattccatttttcgagctaatttgcgattttattttcctatcaaacaaaaattgtgaaatattgttaa |
310 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2900165 |
taaagcaacgtacgtacctcttcttctgtccagattccatttttcgagctaatttgcgattttattttcctatcaaacaaaaattgtgaaatattgttaa |
2900066 |
T |
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| Q |
311 |
agcaatactgcaac |
324 |
Q |
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|||||||||||||| |
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| T |
2900065 |
agcaatactgcaac |
2900052 |
T |
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