View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_37 (Length: 331)
Name: NF12595_low_37
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_37 |
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| [»] chr3 (5 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 1623638 - 1623327
Alignment:
| Q |
20 |
tcatgcacaacgtcaattctaccgacaatgcttcatctatggcaccgtagacttcatctttggcaacgctgcagtagtattccaaaactgtaacattttc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1623638 |
tcatgcacaacgtcaattctaccgacaatgcttcatctatggcaccgtagacttcatctttggcaacgctgcagtagtattccaaaactgtaacattttc |
1623539 |
T |
|
| Q |
120 |
gcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacccattccaaaacactggaatttcattccacaattgtcaaatta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1623538 |
gcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacccattccaaaacactggaatttcattccacaattgtcaaatta |
1623439 |
T |
|
| Q |
220 |
gggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggccttggcaacaatattcaagagtaatggtgatgaaaacttttat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
1623438 |
gggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggccttggcaacaattctcaagagttatggtgatgaaaacttttat |
1623339 |
T |
|
| Q |
320 |
ggacactttagt |
331 |
Q |
| |
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|||||||||||| |
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| T |
1623338 |
ggacactttagt |
1623327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 1629814 - 1629503
Alignment:
| Q |
20 |
tcatgcacaacgtcaattctaccgacaatgcttcatctatggcaccgtagacttcatctttggcaacgctgcagtagtattccaaaactgtaacattttc |
119 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |
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| T |
1629814 |
tcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaacgccgcagtggtattccaaaattgtaacattttc |
1629715 |
T |
|
| Q |
120 |
gcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacccattccaaaacactggaatttcattccacaattgtcaaatta |
219 |
Q |
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|||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1629714 |
gcaagaaagcctttagatggccaagcaaacatgatcactgcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaatta |
1629615 |
T |
|
| Q |
220 |
gggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggccttggcaacaatattcaagagtaatggtgatgaaaacttttat |
319 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1629614 |
gggctgcatcagatctaaaacctgttgttgacaagtacaaaaccttcttgggcagaccttggcaacaatattcaagagtaatggtgatgaaaacttttat |
1629515 |
T |
|
| Q |
320 |
ggacactttagt |
331 |
Q |
| |
|
|||||||||||| |
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| T |
1629514 |
ggacactttagt |
1629503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 10820884 - 10821195
Alignment:
| Q |
20 |
tcatgcacaacgtcaattctaccgacaatgcttcatctatggcaccgtagacttcatctttggcaacgctgcagtagtattccaaaactgtaacattttc |
119 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| |
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| T |
10820884 |
tcatgcacaacgtcaattttacagacaatgcttcatctatggcaccgtagacttcatctttggcaacgctgcagtggtattccaaaattgcaacattttc |
10820983 |
T |
|
| Q |
120 |
gcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacccattccaaaacactggaatttcattccacaattgtcaaatta |
219 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10820984 |
gcaagaaaacctttagatggccaagctaacatgatcactgcccaaggtcgaggtgatccattccaaaacactggaatttcattccacaattgtcaaatta |
10821083 |
T |
|
| Q |
220 |
gggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggccttggcaacaatattcaagagtaatggtgatgaaaacttttat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10821084 |
gggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttaggaagaccttggcaacaatattcaagagttatggtgatgaaaacttttat |
10821183 |
T |
|
| Q |
320 |
ggacactttagt |
331 |
Q |
| |
|
|||||||||||| |
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| T |
10821184 |
ggacactttagt |
10821195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 1606516 - 1606205
Alignment:
| Q |
20 |
tcatgcacaacgtcaattctaccgacaatgcttcatctatggcaccgtagacttcatctttggcaacgctgcagtagtattccaaaactgtaacattttc |
119 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||| |||||||||||| |
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| T |
1606516 |
tcatgcacaacgtcaattttatcgacaatgcttcatctatggcaccgtagacttcatctttggcaatgccgcagtggttttccaaaattgtaacattttc |
1606417 |
T |
|
| Q |
120 |
gcaagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacccattccaaaacactggaatttcattccacaattgtcaaatta |
219 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606416 |
gcaagaaaacctttagatggtcaagctaacatgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaatta |
1606317 |
T |
|
| Q |
220 |
gggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggccttggcaacaatattcaagagtaatggtgatgaaaacttttat |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
1606316 |
gggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggcaggccttggcaacaatattcaagagttatggtgatgaaaactttcat |
1606217 |
T |
|
| Q |
320 |
ggacactttagt |
331 |
Q |
| |
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|||||||||||| |
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|
| T |
1606216 |
ggacactttagt |
1606205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 2576071 - 2576132
Alignment:
| Q |
54 |
atctatggcaccgtagacttcatctttggcaacgctgcagtagtattccaaaactgtaacat |
115 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||| || ||||| |||||||| |||||||| |
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|
| T |
2576071 |
atctatggcaccgtcgacttcattttcggcaacgcagctgtagttttccaaaattgtaacat |
2576132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 18781331 - 18781021
Alignment:
| Q |
21 |
catgcacaacgtcaattctaccgacaatgcttcatctatggcaccgtagacttcatctttggcaacgctgcagtagtattccaaaactgtaacattttcg |
120 |
Q |
| |
|
||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
18781331 |
catgcgcaacgtcaattttacagacaatgcttcatctatggcaccgtcgactttatctttggcaacgccgcagtagtgttccaaaattgtaacattttcg |
18781232 |
T |
|
| Q |
121 |
caagaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacccattccaaaacactggaatttcattccacaattgtcaaattag |
220 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18781231 |
caagaaagcctttagatggccaagcaaacatgatcacggcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattat |
18781132 |
T |
|
| Q |
221 |
ggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggccttggcaacaatattcaagagtaatggtgatgaaaacttttatg |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18781131 |
ggctgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggcaggccttggcaacaatattcaagagttatggtgatgaaaacttttatg |
18781032 |
T |
|
| Q |
321 |
gacactttagt |
331 |
Q |
| |
|
||||||||||| |
|
|
| T |
18781031 |
gacactttagt |
18781021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 44497992 - 44498044
Alignment:
| Q |
57 |
tatggcaccgtagacttcatctttggcaacgctgcagtagtattccaaaactg |
109 |
Q |
| |
|
||||| || ||||||||||||||||||||||| || || |||||||||||||| |
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|
| T |
44497992 |
tatggaactgtagacttcatctttggcaacgcagctgtggtattccaaaactg |
44498044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 284
Target Start/End: Complemental strand, 12802894 - 12802634
Alignment:
| Q |
24 |
gcacaacgtcaattctaccgacaatgcttcatctatggcaccgtagacttcatctttggcaacgctgcagtagtattccaaaactgtaacattttcgcaa |
123 |
Q |
| |
|
|||||||||||||| ||| || |||| | ||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||| | ||| | | | |
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|
| T |
12802894 |
gcacaacgtcaattttacagagaatgttacatctatggcaccgttgacttcatctttggcaacgcagccgtagttttccaaaactgcatgattcttgtta |
12802795 |
T |
|
| Q |
124 |
gaaagcctttggatggccaagctaacatgatcacagcccaaggtcgtggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggc |
223 |
Q |
| |
|
||| |||||| | |||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| | ||||| | ||| |||||||| |
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|
| T |
12802794 |
gaaggcctttaaacggccaagcaaacatgatcacggcccaaggtcgtgatgacccatttcaaaacactggaatttcgattcacaactctcagattagggc |
12802695 |
T |
|
| Q |
224 |
tgcatcagatctaaagcctgttgttgacaagtacaaaaccttcttgggaaggccttggcaa |
284 |
Q |
| |
|
|| ||||| | ||||| ||||| | || | ||| ||||||||||| |||| |||||| |
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|
| T |
12802694 |
cgcgccagatttcaagcccgttgtcgggaaattcaacaccttcttgggccggccctggcaa |
12802634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 8767056 - 8767130
Alignment:
| Q |
53 |
catctatggcaccgtagacttcatctttggcaacgctgcagtagtattccaaaactgtaacattttcgcaagaaa |
127 |
Q |
| |
|
|||||||||||| || || ||||||||||| ||||| || ||||| || ||||| |||||||||||||||||||| |
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| T |
8767056 |
catctatggcacagttgatttcatctttggtaacgccgcggtagttttgcaaaattgtaacattttcgcaagaaa |
8767130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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