View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12595_low_4 (Length: 636)

Name: NF12595_low_4
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12595_low_4
NF12595_low_4
[»] chr8 (4 HSPs)
chr8 (142-619)||(35594088-35594565)
chr8 (400-619)||(35568181-35568400)
chr8 (400-619)||(35582912-35583131)
chr8 (61-124)||(34615500-34615563)
[»] chr4 (6 HSPs)
chr4 (30-126)||(6842243-6842339)
chr4 (34-127)||(52462349-52462442)
chr4 (90-126)||(46854312-46854348)
chr4 (30-124)||(29322215-29322310)
chr4 (70-124)||(16491292-16491346)
chr4 (30-82)||(46854340-46854391)
[»] scaffold0373 (1 HSPs)
scaffold0373 (30-126)||(3861-3957)
[»] chr2 (1 HSPs)
chr2 (30-126)||(6149523-6149619)
[»] chr3 (1 HSPs)
chr3 (30-124)||(46224714-46224808)
[»] chr1 (2 HSPs)
chr1 (30-124)||(22667885-22667979)
chr1 (480-537)||(26859934-26859991)
[»] chr6 (1 HSPs)
chr6 (61-124)||(34376867-34376930)


Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 142 - 619
Target Start/End: Complemental strand, 35594565 - 35594088
Alignment:
Q  142 ttataaaaagtaagcttgagcgattttataaatgcaagccaaatcccatggttgatgtgtacacaaaactgacaacacgtggacttttcgttcgcactgt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35594565 ttataaaaagtaagcttgagcgattttataaatgcaagccaaatcccatggttgatgtgtacacaaaactgacaacacgtggacttttcgttcgcactgt 35594466  T
Q  242 agttgataaaattgagcctcatgtttcatttcataccttgcataataacnnnnnnncctgagcctctagtttcattatctctgagctaaatcatctaaca 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||||||||||    
T  35594465 agttgataaaattgagcctcatgtttcatttcataccttgcataataacaaaaaaacctgagcctctagtttcattatctctaagctaaatcatctaaca 35594366  T
Q  342 ttgaagtgtttccactttcttctcttgttccattactctgcagaaagggaacaatggaagctttttctgttagttcacttcacataccaatagcacttga 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35594365 ttgaagtgtttccactttcttctcttgttccattactctgcagaaagggaacaatggaagctttttctgttagttcacttcacataccaatagcacttga 35594266  T
Q  442 accacaaatcccattnnnnnnntatatgttcttcaactcacaagtgcattcaacacttccattaattcgtgggaacgcttcaaaattcaagcttttcacc 541  Q
    |||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35594265 accacaaatcccattaaaaaaatctatgttcttcaactcacaagtgcattcaacacttccattaattcgtgggaacgcttcaaaattcaagcttttcact 35594166  T
Q  542 gccttatcaccttctccattaacagagtctagtagtagtaaccttgaagtggatgatgaaccagaagatgaaacaggt 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35594165 gccttatcaccttctccattaacagagtctagtagtagtaaccttgaagtggatgatgaaccagaagttgaaacaggt 35594088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 400 - 619
Target Start/End: Complemental strand, 35568400 - 35568181
Alignment:
Q  400 agctttttctgttagttcacttcacataccaatagcacttgaaccacaaatcccattnnnnnnntatatgttcttcaactcacaagtgcattcaacactt 499  Q
    |||||||||| || ||||||||||||| |||||||||| | || |||||| ||||||       |  |||||||| || |||||| | ||||||||||||    
T  35568400 agctttttctctttgttcacttcacatcccaatagcacataaaacacaaaccccattaaaaaaatccatgttcttgaagtcacaaatccattcaacactt 35568301  T
Q  500 ccattaattcgtgggaacgcttcaaaattcaagcttttcaccgccttatcaccttctccattaacagagtctagtagtagtaaccttgaagtggatgatg 599  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35568300 ccattaattcgtgggaacacttcaaaattcaagcttttcactgccttatcaccttctccgttaacagagtctagtagtagtaaccttgaagtggatgatg 35568201  T
Q  600 aaccagaagatgaaacaggt 619  Q
    ||||||||| ||||||||||    
T  35568200 aaccagaagttgaaacaggt 35568181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 400 - 619
Target Start/End: Complemental strand, 35583131 - 35582912
Alignment:
Q  400 agctttttctgttagttcacttcacataccaatagcacttgaaccacaaatcccattnnnnnnntatatgttcttcaactcacaagtgcattcaacactt 499  Q
    |||||||||| || ||||||||||||| |||||||||| | || |||||| ||||||       |  |||||||| || |||||| | ||||||||||||    
T  35583131 agctttttctcttcgttcacttcacatcccaatagcacataaaacacaaaccccattaaaaaaatccatgttcttgaagtcacaaatccattcaacactt 35583032  T
Q  500 ccattaattcgtgggaacgcttcaaaattcaagcttttcaccgccttatcaccttctccattaacagagtctagtagtagtaaccttgaagtggatgatg 599  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35583031 ccattaattcgtgggaacacttcaaaattcaagcttttcactgccttatcaccttctccgttaacagagtctagtagtagtaaccttgaagtggatgatg 35582932  T
Q  600 aaccagaagatgaaacaggt 619  Q
    ||||||||| ||||||||||    
T  35582931 aaccagaagttgaaacaggt 35582912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 34615563 - 34615500
Alignment:
Q  61 gtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 124  Q
    |||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  34615563 gtggaaagggcatcattccactctctttccattccacccatctttctttccttggaaccaaaca 34615500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 6842339 - 6842243
Alignment:
Q  30 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacata 126  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6842339 tttccttagctttatgaaggtgtgtcaaacagtggaaagagcatcattccactctctttccattccactcctctttctttccttggaaccaaacata 6842243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 52462349 - 52462442
Alignment:
Q  34 cttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacatat 127  Q
    |||||||||||||||||||   ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  52462349 cttagctttatgaaggtgtaccaaacagtagaaagagcatcattccactctctttccattccactcctctttctttcgttggaaccaaacatat 52462442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 46854348 - 46854312
Alignment:
Q  90 cattccactcctctttctttccttggaaccaaacata 126  Q
    |||||||||||||||||||||||||||||||||||||    
T  46854348 cattccactcctctttctttccttggaaccaaacata 46854312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 29322310 - 29322215
Alignment:
Q  30 tttccttagcttta-tgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 124  Q
    |||||||||||||  ||||||||||| |||   |||||||  |||||||||||| |||||||  |||||||  |||||||||| ||||| ||||||    
T  29322310 tttccttagcttttgtgaaggtgtgtcaaactatggaaaggacatcattccactctctttcccatccactcacctttctttccatggaatcaaaca 29322215  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 16491346 - 16491292
Alignment:
Q  70 gcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 124  Q
    ||||||||||||| ||||| ||| || ||| ||||||||||| ||||||||||||    
T  16491346 gcatcattccactctcttttcatccccctcatctttctttccatggaaccaaaca 16491292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 46854391 - 46854340
Alignment:
Q  30 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccact 82  Q
    |||||||||||| |||||||||||  ||| ||| |||||||||||||||||||    
T  46854391 tttccttagctt-atgaaggtgtgccaaacagtagaaagagcatcattccact 46854340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 3861 - 3957
Alignment:
Q  30 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacata 126  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3861 tttccttaactttatgaaggtgtgtcaaacagtggaaagagcatcattccactctctttccattccactcctctttctttccttggaaccaaacata 3957  T

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Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 6149619 - 6149523
Alignment:
Q  30 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaacata 126  Q
    |||||||| |||||||||||||||  ||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6149619 tttccttaactttatgaaggtgtgccaaacagtggaaagaatatcattccactctctttccattccactcctctttctttccttggaaccaaacata 6149523  T

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Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 46224714 - 46224808
Alignment:
Q  30 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 124  Q
    ||||||||||||| |||||||||   |||  |||||||| ||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||    
T  46224714 tttccttagctttgtgaaggtgttccaaacggtggaaagggcatcattccactctcttttcattccacccatctttctttccttggaaccaaaca 46224808  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 22667979 - 22667885
Alignment:
Q  30 tttccttagctttatgaaggtgtgttaaatagtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 124  Q
    ||||| ||||||| |||||||||   |||  |||||||| ||||||||||||| |||||||||||||  | ||||||||||||||||||||||||    
T  22667979 tttccatagctttgtgaaggtgttccaaacggtggaaagggcatcattccactctctttccattccatccatctttctttccttggaaccaaaca 22667885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 537
Target Start/End: Original strand, 26859934 - 26859991
Alignment:
Q  480 cacaagtgcattcaacacttccattaattcgtgggaacgcttcaaaattcaagctttt 537  Q
    ||||| |||||||| ||| ||||||||||||||||||| |||||||||| ||||||||    
T  26859934 cacaattgcattcatcacatccattaattcgtgggaacacttcaaaatttaagctttt 26859991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 34376930 - 34376867
Alignment:
Q  61 gtggaaagagcatcattccactttctttccattccactcctctttctttccttggaaccaaaca 124  Q
    |||||||| ||||||||||||| |||||||||||||  | ||||||||||||||||||||||||    
T  34376930 gtggaaagggcatcattccactctctttccattccatccatctttctttccttggaaccaaaca 34376867  T

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