View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_41 (Length: 310)
Name: NF12595_low_41
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_41 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 65 - 310
Target Start/End: Original strand, 9360506 - 9360752
Alignment:
| Q |
65 |
ggacatcttgatgctagatttaaattgtgttttcaagatttaaatttaattcatttgtaatannnnnnngaaggagtttatgtaatgtaacatt-gagtt |
163 |
Q |
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| T |
9360506 |
ggacatattgatgttacatttaaattgtgttttcaagatttaaatttaattcatttgtaatatgtttttgaaggagtttatgtaatgtaacatttgagtt |
9360605 |
T |
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| Q |
164 |
tctttttgtgataatggtaatttaagggaaaagttgcagattaaggtggtgtaatcagctagatcctagaattaatagagcagcttttagtgaggaagaa |
263 |
Q |
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| T |
9360606 |
tccttttgtgataatggtaattgaagggaaaagttgcagattaaggtggtgtaatcagctagatcctagaattaatagagcagcttttagtgaggaagaa |
9360705 |
T |
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| Q |
264 |
gaggagaagcttttgcatgctcatacacttcatggtaacaaatggtc |
310 |
Q |
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| T |
9360706 |
gaggagaagcttttgcatgctcatacacttcatggtaacaaatggtc |
9360752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 166 - 308
Target Start/End: Original strand, 9356060 - 9356202
Alignment:
| Q |
166 |
tttttgtgataatggtaatttaagggaaaagttgcagattaaggtggtgtaatcagctagatcctagaattaatagagcagcttttagtgaggaagaaga |
265 |
Q |
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| T |
9356060 |
tttttgtgataatggtaattgcagggaaaagttgtagattaaggtggcttaatcacctagatcctagcatcaaaagagaacctttaagtaaggaagaaga |
9356159 |
T |
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| Q |
266 |
ggagaagcttttgcatgctcatacacttcatggtaacaaatgg |
308 |
Q |
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| T |
9356160 |
ggagatgcttttgcagcttcatacacttcatggtaccaaatgg |
9356202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 174 - 308
Target Start/End: Original strand, 9348043 - 9348177
Alignment:
| Q |
174 |
ataatggtaatttaagggaaaagttgcagattaaggtggtgtaatcagctagatcctagaattaatagagcagcttttagtgaggaagaagaggagaagc |
273 |
Q |
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| T |
9348043 |
ataatgataattgcagggaaaagttgtagattaaggtggcttaatcacctagatcctagcatcaaaagagaacctttaagtaaggaagaagaggagatgc |
9348142 |
T |
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| Q |
274 |
ttttgcatgctcatacacttcatggtaacaaatgg |
308 |
Q |
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| T |
9348143 |
ttttgcagcttcatacacttcatggtaccaaatgg |
9348177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 51
Target Start/End: Original strand, 9360455 - 9360486
Alignment:
| Q |
20 |
tttcctaatgataaaagaaaatttgataatca |
51 |
Q |
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| T |
9360455 |
tttcctaatgataaaagaaaatttgataatca |
9360486 |
T |
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