View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12595_low_42 (Length: 303)
Name: NF12595_low_42
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 43954690 - 43954433
Alignment:
| Q |
20 |
accccttcggtagaattattcatataagtcctggcattggtagatttgttgccaagagttacaccccaaggtatatctttctactttcttctttctactt |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43954690 |
accccttcagtagaattattcatataagtcctggcattgatagatttgttgccaagagttacaccccaaggtatatctttctacttt------------- |
43954604 |
T |
|
| Q |
120 |
tgtcctctggtaatctaatagaggactacagctaatttctgtttgttacagacagttgctcaaagtattacctggtactccagtaattgaaatttatgtg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43954603 |
-gtcctctggtaatctaatagaggactacagctaatttctgtttgttacagacagttgctcaaagtattacctggtactccagtatttgaaatttatgtg |
43954505 |
T |
|
| Q |
220 |
gtnnnnnnntgctgattatacatatcaaatgcaggtaataatataattttcccactaaatgatgcttgttcat |
292 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43954504 |
gt-aaaaaatgctgattatacatatcaaatgcaggtaataatataattttcccactaaacgatgcttgttcat |
43954433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University