View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_43 (Length: 301)
Name: NF12595_low_43
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 18526075 - 18526174
Alignment:
| Q |
8 |
gagtagcagagaggttattgtgcaaatcatggggatattgagagtagttgttagaggctctccataccatgaatcagtccagaaatttactctttcacca |
107 |
Q |
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| T |
18526075 |
gagtagcattgaggttattgtgcagatcagggggatattgagagtaattgttagaggatctccataccatgaatcagtccagaaatttattctttcacca |
18526174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 268
Target Start/End: Complemental strand, 38359514 - 38359299
Alignment:
| Q |
53 |
agttgttagaggctctccataccatgaatcagtccagaaatttactctttcaccattaccaatgttccaagaaacattgtcaagcactgtggaaaatttg |
152 |
Q |
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| T |
38359514 |
agttgtcaaaggctctctacaccaggaatcaatccagaagttaatattttccccatttccaatatttcaagacacattttctagcacagtagagtattta |
38359415 |
T |
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| Q |
153 |
tttctagcaccactccaaacagatgatgaaacataataattgactggttttttgtttctaagaatcctgcttctaatgaattgagcccattgcaagtctg |
252 |
Q |
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| T |
38359414 |
tgcctagcaccactcaaaacagatgacgaaacatgataattgactggttttttgttccttaggatcctgcttctaatgaactgatcccattgtaaatctg |
38359315 |
T |
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| Q |
253 |
attgcattatgtccca |
268 |
Q |
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| T |
38359314 |
attgcatgatatccca |
38359299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 16182640 - 16182587
Alignment:
| Q |
218 |
cctgcttctaatgaattgagcccattgcaagtctgattgcattatgtcccaaca |
271 |
Q |
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| T |
16182640 |
cctgcttctaactaattgagcccattgtaagtctgactgcatgatgtcccaaca |
16182587 |
T |
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