View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12595_low_45 (Length: 282)
Name: NF12595_low_45
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_45 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0001 (3 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 21533669 - 21533388
Alignment:
| Q |
1 |
tcaattggagttgaatattggccacattcaaacaataactcaggagccctataaaaccgagttgctacctgtgacaatagtgtaaaagatatttcaggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21533669 |
tcaattggagttgaatattggccacattcaaacaataactcaggtgccctataaaaccgagttgctacctgtgacaatagtgtaaaagatatttcaggaa |
21533570 |
T |
|
| Q |
101 |
ccattacattacatctactttcattataagatctactgtcagaaaccattacaatatctcaggtgtttttggaaataaataaagacaactactatggtta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21533569 |
ccattacattacatctactttcattataagatctactctcagaaaccattacaatatctcaggtgtttttggaaataaataaagacaactactatggtta |
21533470 |
T |
|
| Q |
201 |
tatcaggaaccattacatctactttcagtataagatcacaaactattccattagaattgaccactcttgttaataactattt |
282 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
21533469 |
tatcaggaaccattacatcaactttcattataagatcacaaactattccattataattgaccactcttgtgaataactattt |
21533388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 2059 - 1952
Alignment:
| Q |
1 |
tcaattggagttgaatattggccacattcaaacaataactcaggagccctataaaaccgagttgctacctgtgacaatagtgtaaaagatatttcaggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| || |||| |||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
2059 |
tcaattggagttgaatattggccacattcaaacaatatctcaggtgctgtatacaaccgagttgctacctgttacaatagtgtaaaagacatttcaggaa |
1960 |
T |
|
| Q |
101 |
ccattaca |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
1959 |
ccattaca |
1952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 9668 - 9564
Alignment:
| Q |
4 |
attggagttgaatattggccacattcaaacaataactcaggagccctataaaaccgagttgctacctgtgacaatagtgtaaaagatatttcaggaacca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| || | || |||||||||||||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
9668 |
attggagttgaatattggccacattcaaacaatatctcaggtgctgtttacaaccgagttgctacctgttacaatagtgtataagacatttcaggaaccg |
9569 |
T |
|
| Q |
104 |
ttaca |
108 |
Q |
| |
|
||||| |
|
|
| T |
9568 |
ttaca |
9564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 23400 - 23296
Alignment:
| Q |
4 |
attggagttgaatattggccacattcaaacaataactcaggagccctataaaaccgagttgctacctgtgacaatagtgtaaaagatatttcaggaacca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| || | || |||||||||||||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
23400 |
attggagttgaatattggccacattcaaacaatatctcaggtgctgtttacaaccgagttgctacctgttacaatagtgtataagacatttcaggaaccg |
23301 |
T |
|
| Q |
104 |
ttaca |
108 |
Q |
| |
|
||||| |
|
|
| T |
23300 |
ttaca |
23296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 41574264 - 41574337
Alignment:
| Q |
203 |
tcaggaaccattacatctactttcagtataagatcacaaactattccattagaattgaccactcttgttaataact |
278 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| || | |||||| ||| |||||||||| | ||||||| |
|
|
| T |
41574264 |
tcaggaaccattacatctactttcattataagatcacacac--tcccattataatcgaccactcttctgaataact |
41574337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University