View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12595_low_46 (Length: 275)

Name: NF12595_low_46
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12595_low_46
NF12595_low_46
[»] chr5 (7 HSPs)
chr5 (21-275)||(29572572-29572825)
chr5 (21-275)||(29573949-29574202)
chr5 (21-275)||(29575326-29575579)
chr5 (21-275)||(29576703-29576956)
chr5 (21-275)||(29578080-29578333)
chr5 (21-275)||(29579457-29579710)
chr5 (56-223)||(23923048-23923215)
[»] chr7 (4 HSPs)
chr7 (54-159)||(23054802-23054907)
chr7 (72-159)||(47923910-47923997)
chr7 (62-163)||(5865312-5865413)
chr7 (101-162)||(22819552-22819613)
[»] chr1 (2 HSPs)
chr1 (91-159)||(4422889-4422957)
chr1 (101-129)||(48265586-48265614)
[»] chr3 (3 HSPs)
chr3 (52-149)||(9509949-9510046)
chr3 (52-149)||(9517924-9518021)
chr3 (101-162)||(25132349-25132410)
[»] chr6 (1 HSPs)
chr6 (62-163)||(900688-900789)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 29572825 - 29572572
Alignment:
Q  21 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 120  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29572825 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29572726  T
Q  121 ctcctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccg 220  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  29572725 ctcctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccg 29572626  T
Q  221 ctagatcaaaacaacagcctaaaacgccgacaaagaggcacatctcctaaccacc 275  Q
    ||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  29572625 ctagatc-aaacaacagcctaaaacgctgacagagaagcacatctcctaaccacc 29572572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 29574202 - 29573949
Alignment:
Q  21 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 120  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29574202 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29574103  T
Q  121 ctcctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccg 220  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  29574102 ctcctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccg 29574003  T
Q  221 ctagatcaaaacaacagcctaaaacgccgacaaagaggcacatctcctaaccacc 275  Q
    ||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  29574002 ctagatc-aaacaacagcctaaaacgctgacagagaagcacatctcctaaccacc 29573949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 29575579 - 29575326
Alignment:
Q  21 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 120  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29575579 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29575480  T
Q  121 ctcctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccg 220  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  29575479 ctcctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccg 29575380  T
Q  221 ctagatcaaaacaacagcctaaaacgccgacaaagaggcacatctcctaaccacc 275  Q
    ||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  29575379 ctagatc-aaacaacagcctaaaacgctgacagagaagcacatctcctaaccacc 29575326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 29576956 - 29576703
Alignment:
Q  21 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 120  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29576956 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29576857  T
Q  121 ctcctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccg 220  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  29576856 ctcctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccg 29576757  T
Q  221 ctagatcaaaacaacagcctaaaacgccgacaaagaggcacatctcctaaccacc 275  Q
    ||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  29576756 ctagatc-aaacaacagcctaaaacgctgacagagaagcacatctcctaaccacc 29576703  T

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Target: chr5; HSP #5
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 29578333 - 29578080
Alignment:
Q  21 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 120  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29578333 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29578234  T
Q  121 ctcctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccg 220  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  29578233 ctcctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccg 29578134  T
Q  221 ctagatcaaaacaacagcctaaaacgccgacaaagaggcacatctcctaaccacc 275  Q
    ||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  29578133 ctagatc-aaacaacagcctaaaacgctgacagagaagcacatctcctaaccacc 29578080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 29579710 - 29579457
Alignment:
Q  21 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 120  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29579710 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29579611  T
Q  121 ctcctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccg 220  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  29579610 ctcctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccg 29579511  T
Q  221 ctagatcaaaacaacagcctaaaacgccgacaaagaggcacatctcctaaccacc 275  Q
    ||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  29579510 ctagatc-aaacaacagcctaaaacgctgacagagaagcacatctcctaaccacc 29579457  T

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Target: chr5; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 23923048 - 23923215
Alignment:
Q  56 tgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgcc 155  Q
    ||||| ||||||||| |||||||||||| |||||||||| |||  |||||||||||||||| |||||||||||| | ||| |||||||||||||| ||||    
T  23923048 tgatcagaaacattaacctgcaaaataacgttagaaagtaacaacctacactccgctaacatctcctcctcccacacccacaacctcctcctccactgcc 23923147  T
Q  156 aagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 223  Q
    ||||||||            | ||||||| |||||||||||||||| |||||||| ||||||||||||    
T  23923148 aagcctcaccccctccccccaacctagagggaacatagtagcaactgaagacaacttgttctccgcta 23923215  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 23054907 - 23054802
Alignment:
Q  54 agtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattg 153  Q
    ||||||| |||| || | |||||| ||||| |||||||||| | || |||||||||||||||| ||  |||||||| | ||| |||||||||||||| ||    
T  23054907 agtgatccgaaatatcaacctgcataataaagttagaaagtaatatcctacactccgctaacatcttttcctcccacacccacaacctcctcctccactg 23054808  T
Q  154 ccaagc 159  Q
    ||||||    
T  23054807 ccaagc 23054802  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 47923910 - 47923997
Alignment:
Q  72 cctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagc 159  Q
    ||||||||| || |||||||||| || |  |||||||| |||||| ||| |||||||| | ||| |||||||||||||| ||||||||    
T  47923910 cctgcaaaacaacgttagaaagtaacgtcatacactcctctaacatctcttcctcccacacccacaacctcctcctccactgccaagc 47923997  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 5865312 - 5865413
Alignment:
Q  62 gaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcct 161  Q
    |||||||||  ||||||| |||  |||| |||| |||  |||||||||||||||||||||||||| ||   ||| ||| ||| |||||| ||||| ||||    
T  5865312 gaaacattaatctgcaaagtaacattagcaagtaacaacctacactccgctaacaactcctcctctcacgcccacaacatccgcctccactgccacgcct 5865411  T
Q  162 ca 163  Q
    ||    
T  5865412 ca 5865413  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 22819613 - 22819552
Alignment:
Q  101 ctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcctc 162  Q
    ||||||||| |||||||||||||||||||   ||| |||||||| | ||||||||| |||||    
T  22819613 ctacactcccctaacaactcctcctcccaggcccacaacctcctacgccattgccacgcctc 22819552  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 4422889 - 4422957
Alignment:
Q  91 aagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagc 159  Q
    |||| |||| |||||||||||||||||||| ||||| |||| ||| |||||||||||||| ||||||||    
T  4422889 aagtaacatcctacactccgctaacaactcttcctctcatacccacaacctcctcctccactgccaagc 4422957  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 48265614 - 48265586
Alignment:
Q  101 ctacactccgctaacaactcctcctccca 129  Q
    |||||||||||||||||||||||||||||    
T  48265614 ctacactccgctaacaactcctcctccca 48265586  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 9509949 - 9510046
Alignment:
Q  52 caagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctcc 149  Q
    ||||||||| |||||| ||  | ||||| |||  |||| |||| | || ||||||||||||| ||||||||||||||||  ||| |||||||||||||    
T  9509949 caagtgatctgaaacactagacagcaaagtaacattagcaagtaagatcctacactccgctaccaactcctcctcccatgcccacaacctcctcctcc 9510046  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 9517924 - 9518021
Alignment:
Q  52 caagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctcc 149  Q
    ||||||||| |||||| ||  | ||||| |||  |||| |||| | || ||||||||||||| ||||||||||||||||  ||| |||||||||||||    
T  9517924 caagtgatctgaaacactagacagcaaagtaacattagcaagtaagatcctacactccgctaccaactcctcctcccatgcccacaacctcctcctcc 9518021  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 25132349 - 25132410
Alignment:
Q  101 ctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcctc 162  Q
    ||||||||| |||  |||||||||||||| | ||| |||||||| ||||||| |||||||||    
T  25132349 ctacactcccctagtaactcctcctcccacacccacaacctccttctccatttccaagcctc 25132410  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 900789 - 900688
Alignment:
Q  62 gaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcct 161  Q
    ||||||||  |||||||| |||  |||| |||| |||  |||||||||||||||||||| ||||||||   ||| ||||||||| | || ||||| ||||    
T  900789 gaaacattgacctgcaaagtaacattagcaagtaacaacctacactccgctaacaactcatcctcccacgcccacaacctcctctttcactgccacgcct 900690  T
Q  162 ca 163  Q
    ||    
T  900689 ca 900688  T

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