View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_48 (Length: 269)
Name: NF12595_low_48
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 9360742 - 9361000
Alignment:
| Q |
1 |
aacaaatggtcacacattagcaaattctttcctggaaggacagataatgcactgaagaatcattatcatgtgatcatggctaggaagcaaagggaactat |
100 |
Q |
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| T |
9360742 |
aacaaatggtcacacatttgcaaattctttcctggaaggacagacaatgcactgaagaatcattttcatgtgattatggctaggaagcaaagggaactat |
9360841 |
T |
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| Q |
101 |
tatcatctatttcaagaaagagaaagctaacatttcaaatcccagcaaataataatgtagctagcaaatcagcaatcacaagtccctttgatgaatctaa |
200 |
Q |
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| T |
9360842 |
tatcatctatttcaagaaagagaaagctaacatttcaaatcccagcaaataataatgtagctagcaaatcagcaatcacaagtccctttgatgaatctaa |
9360941 |
T |
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| Q |
201 |
ctcaacttgcaccaatctcaacctcactactaggcctttgcttaattaccatgcctatg |
259 |
Q |
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| T |
9360942 |
ctcaacttgcaccaatctcaacctcactactaggcctttgcttaattaccatgcctatg |
9361000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 9348171 - 9348317
Alignment:
| Q |
3 |
caaatggtcacacattagcaaattctttcctggaaggacagataatgcactgaagaatcattatcatgtgatcatggctaggaagcaaagggaactatta |
102 |
Q |
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| T |
9348171 |
caaatgggcacacatttccaaacattttccaggaaggagagacaatgcactaaagaatcattaccatgtgatcaaggctaggaggcaaagggaactccta |
9348270 |
T |
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| Q |
103 |
tcatctatttcaagaaagagaaagctaacatttcaaatcccagcaaa |
149 |
Q |
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| T |
9348271 |
tcatctattgcaagaaaggaaaagctaacatatgaaatcccagcaaa |
9348317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 9356196 - 9356342
Alignment:
| Q |
3 |
caaatggtcacacattagcaaattctttcctggaaggacagataatgcactgaagaatcattatcatgtgatcatggctaggaagcaaagggaactatta |
102 |
Q |
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| T |
9356196 |
caaatgggcacacatttccaaacattttccaggaaggagagacaatgcactaaagaatcattaccatgtgatcaaggctaggaggcaaagggaactccta |
9356295 |
T |
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| Q |
103 |
tcatctatttcaagaaagagaaagctaacatttcaaatcccagcaaa |
149 |
Q |
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| T |
9356296 |
tcatctattgcaagaaaggaaaagctaacatatgaaatcccagcaaa |
9356342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 33825709 - 33825654
Alignment:
| Q |
28 |
tttcctggaaggacagataatgcactgaagaatcattatcatgtgatcatggctag |
83 |
Q |
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| T |
33825709 |
tttccagggaggacagataatgcagtgaagaatcattggcatgtgatcatggctag |
33825654 |
T |
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