View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12595_low_49 (Length: 265)

Name: NF12595_low_49
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12595_low_49
NF12595_low_49
[»] chr5 (5 HSPs)
chr5 (19-265)||(11491111-11491357)
chr5 (19-149)||(38166508-38166630)
chr5 (19-149)||(38173250-38173372)
chr5 (19-149)||(38200474-38200596)
chr5 (27-112)||(11484415-11484500)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 11491357 - 11491111
Alignment:
Q  19 tttgtcaccacaaattcttttgaaatatctttccaacgtcccttgccatatttttctatcccctccagaaacaacctatacatcacaaattatagattga 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11491357 tttgttaccacaaattcttttgaaatatctttccaacgtcccttgccatatttttctatcccctccagaaacaacctatacatcacaaattatagattga 11491258  T
Q  119 atgtgaaatattcaaattcaattaaataataaagaaattaggtaactatatcttggtatgtacccaaaacaaagcaaatacttgcattgannnnnnnncc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        ||    
T  11491257 atgtgaaatattcaaattcaattaaataataaagaaattaggtaactatatcttggtatgtacccaaaacaatgcaaatacttgcattgattttttttcc 11491158  T
Q  219 ttctctatgcaaccttgaaagattaatttgacatatttttgtttttc 265  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||    
T  11491157 ttctctatgcaaccttgaaagattaatttgtaacatttttgtttttc 11491111  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 38166630 - 38166508
Alignment:
Q  19 tttgtcaccacaaattcttttgaaatatctttccaacgtcccttgccatatttttctatcccctccagaaacaacctatacatcacaaattatagattga 118  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||  | ||||| || |||||||||||| |        |||||| |||    
T  38166630 tttgtcaccacgaattcttttgaaatatctttccagcgtccctttccatgttttttcagccccttcaaaaacaacctatata--------tatagaatga 38166539  T
Q  119 atgtgaaatattcaaattcaattaaataata 149  Q
    ||||||||||||||||||||| |||||||||    
T  38166538 atgtgaaatattcaaattcaactaaataata 38166508  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 38173250 - 38173372
Alignment:
Q  19 tttgtcaccacaaattcttttgaaatatctttccaacgtcccttgccatatttttctatcccctccagaaacaacctatacatcacaaattatagattga 118  Q
    ||||||||||| ||||||||||||||||||||||| | |||||| |||| |||||  | ||||| || |||||||||||| |        |||||| |||    
T  38173250 tttgtcaccacgaattcttttgaaatatctttccagcatccctttccatgttttttcagccccttcaaaaacaacctatata--------tatagaatga 38173341  T
Q  119 atgtgaaatattcaaattcaattaaataata 149  Q
    ||||||||||||||||||||| |||||||||    
T  38173342 atgtgaaatattcaaattcaactaaataata 38173372  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 38200474 - 38200596
Alignment:
Q  19 tttgtcaccacaaattcttttgaaatatctttccaacgtcccttgccatatttttctatcccctccagaaacaacctatacatcacaaattatagattga 118  Q
    ||||||||||| ||||||||||||||||||||||| | |||||| |||| |||||  | ||||| || |||||||||||| |        |||||| |||    
T  38200474 tttgtcaccacgaattcttttgaaatatctttccagcatccctttccatgttttttcagccccttcaaaaacaacctatata--------tatagaatga 38200565  T
Q  119 atgtgaaatattcaaattcaattaaataata 149  Q
    ||||||||||||||||||||| |||||||||    
T  38200566 atgtgaaatattcaaattcaactaaataata 38200596  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 11484500 - 11484415
Alignment:
Q  27 cacaaattcttttgaaatatctttccaacgtcccttgccatatttttctatcccctccagaaacaacctatacatcacaaattata 112  Q
    |||||||||| ||||||||||||||||||||||| | |||| |||||  | |||||  |||||||||||| | |||||||| ||||    
T  11484500 cacaaattctcttgaaatatctttccaacgtcccctaccatgttttttcaccccctgtagaaacaacctacatatcacaaaatata 11484415  T

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