View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_5 (Length: 607)
Name: NF12595_low_5
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 28749029 - 28749326
Alignment:
| Q |
19 |
aatgttgttgactctacaagggtgtgacattgttaggagtctcacattgagtatataaagtgtttaatatggtatataagtcataaggctctcccgcccg |
118 |
Q |
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| T |
28749029 |
aatgttgttgactctacaagggtgtgacattgttaggagtctcacattgagtatataaagtgtttaatatggtatataagtcataaggctctcccgcccg |
28749128 |
T |
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| Q |
119 |
tgagcacccacactcgtgccatccattcgggctagacagataatcgaggcccgtatgaaacttgtgtaacaatttgctcataaatcgaatc-ggggaata |
217 |
Q |
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| T |
28749129 |
tgagcacccacactcgtgccatccattcgggctagacagataatcgagacccatatgaaactcatgtaacaatttgctcataaatcgaatcgggggaata |
28749228 |
T |
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| Q |
218 |
agttcggttggccaggtgactcgggaccattaaatggtttgttgtggaaacgtacggatcggttcaatctagtattattggaccatctatattaaaga |
315 |
Q |
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| T |
28749229 |
agttcggttggccgggtgattcgggaccattaaatggtttgttgtggaaatgtacagatcggttcaatctagtattattggaccatctatattaaaga |
28749326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 403 - 592
Target Start/End: Original strand, 28749415 - 28749604
Alignment:
| Q |
403 |
ttcaataatcatcaacaattgaaaattcgtctgtaaaaaccgtctaaattaaaaaattgaaatccgtctaaaccgatttgtacatggtcgagaatgaacc |
502 |
Q |
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| T |
28749415 |
ttcaataatcatcaacaattgaaaattcgtctgtaaaaaccgtctaaattaaaaaaccaaaatccgtctaaaccgatttgtacatggtcgagaatgaacc |
28749514 |
T |
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| Q |
503 |
tcatgatggcacctacagttttgattggatcggcattttaggtctgccaaagaatcgaaactaaccatttatccacctccgccgtctgtg |
592 |
Q |
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| T |
28749515 |
ttatgatggcacctacagtttcgattggatcggcatttttggtctgtcaaagaatcgaaactaaccatttatccacctccaccatctgtg |
28749604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 36975926 - 36975991
Alignment:
| Q |
49 |
tgttaggagtctcacattgagtatat-aaagtgtttaatatggtatataagtcataaggctctccc |
113 |
Q |
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| T |
36975926 |
tgttaggagtcccacatcgagtagatcaaagtgtttgatgtggtatttaagtcataaggctctccc |
36975991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 36975237 - 36975302
Alignment:
| Q |
49 |
tgttaggagtctcacattgagtatat-aaagtgtttaatatggtatataagtcataaggctctccc |
113 |
Q |
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| T |
36975237 |
tgttaggagtcccacatcgagtagattaaagtgtttgatgtagtatttaagtcataaggctctccc |
36975302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 25581827 - 25581867
Alignment:
| Q |
37 |
agggtgtgacattgttaggagtctcacattgagtatataaa |
77 |
Q |
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| T |
25581827 |
agggtgtggcattgttaggagtcccacattgagtagataaa |
25581867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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