View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_51 (Length: 264)
Name: NF12595_low_51
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 14490808 - 14490637
Alignment:
| Q |
16 |
atgaaagccataatcctgaagtcataaaacttatgcactagaatgcaactacatcaaaattagaacttatacatcatctatattagtagacaagcatgtg |
115 |
Q |
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| T |
14490808 |
atgaaagccataatcctgaagtcataaaacttatgcactagaatgcaactacatcaaaattagaacttatacatcatctatattagtagacaagcatgtg |
14490709 |
T |
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| Q |
116 |
atttaatagtcaaacacaacaagagaaattaaagttttattttggggcaccaaggtatcatacaccaacatc |
187 |
Q |
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| T |
14490708 |
atttaatagtcaaactcaacaaaagaaattaaagttttattttggggcaccaaggtatcatacaccaacatc |
14490637 |
T |
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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 187
Target Start/End: Complemental strand, 43656673 - 43656524
Alignment:
| Q |
33 |
gaagtcataaaacttatgcactagaatgcaactacatcaaaattagaacttatacatcatctatattagtagacaagcatgtgatttaatagtcaaacac |
132 |
Q |
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| T |
43656673 |
gaagtcataaaacttatgcactagaatgcaactacatctaaattagaacttatatatcatcta-attagtaaataagtccttga--caacagtcaaacac |
43656577 |
T |
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| Q |
133 |
aacaagagaaattaaagttttattttggggcaccaaggtatcatacaccaacatc |
187 |
Q |
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| T |
43656576 |
aacaaaggaaattaaagttttatttt-gagcacc-aggtatcatacaccaacatc |
43656524 |
T |
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