View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_52 (Length: 260)
Name: NF12595_low_52
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_52 |
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| [»] scaffold0006 (3 HSPs) |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 131236 - 131000
Alignment:
| Q |
1 |
tacttgaaggttgtgttgagcaagggcacctagtcagctaataacctatatgtgctcatagtttgtgagagtccataggttgtataatcatttagataag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
131236 |
tacttgaaggttgtgttgagcaagggcacctagtcagctaataacctatatgtgctcatagtttgtgagagtccataggttgtataatcatttagataag |
131137 |
T |
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| Q |
101 |
attgggagaaaaactgagaaaccgatcatcaatattgtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattccctatatttgtcctgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
131136 |
attgggagaaaaactgagaaaccgatcatcaa---tgtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattccctatatttgtcctgtt |
131040 |
T |
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| Q |
201 |
gttgagttcttattgtcacttttagcaggaagttatcatt |
240 |
Q |
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||| ||||||||||||| |||||||||||||||||||||| |
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| T |
131039 |
gttcagttcttattgtcgcttttagcaggaagttatcatt |
131000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 240
Target Start/End: Complemental strand, 125370 - 125341
Alignment:
| Q |
211 |
tattgtcacttttagcaggaagttatcatt |
240 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
125370 |
tattgtcacttttagcaggaagttatcatt |
125341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 91
Target Start/End: Complemental strand, 125477 - 125448
Alignment:
| Q |
62 |
tttgtgagagtccataggttgtataatcat |
91 |
Q |
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| T |
125477 |
tttgtgagagtccataggttgtataatcat |
125448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13602579 - 13602343
Alignment:
| Q |
1 |
tacttgaaggttgtgttgagcaagggcacctagtcagctaataacctatatgtgctcatagtttgtgagagtccataggttgtataatcatttagataag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13602579 |
tacttgaaggttgtgttgagcaagggcacctagtcagctaataacctatatgtgctcatagtttgtgagagtccataggttgtataatcatttagataag |
13602480 |
T |
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| Q |
101 |
attgggagaaaaactgagaaaccgatcatcaatattgtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattccctatatttgtcctgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13602479 |
attgggagaaaaactgagaaaccgatcatcaa---tgtttaatggcatgaaaatgcttgtgcaaaaaggaatcacaaacattccctatatttgtcctgtt |
13602383 |
T |
|
| Q |
201 |
gttgagttcttattgtcacttttagcaggaagttatcatt |
240 |
Q |
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||| ||||||||||||| |||||||||||||||||||||| |
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| T |
13602382 |
gttcagttcttattgtcgcttttagcaggaagttatcatt |
13602343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4800047 - 4800084
Alignment:
| Q |
1 |
tacttgaaggttgtgttgagcaagggcacctagtcagc |
38 |
Q |
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|||||||||||||||||||||||||| ||||| ||||| |
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| T |
4800047 |
tacttgaaggttgtgttgagcaagggaacctaatcagc |
4800084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 91
Target Start/End: Complemental strand, 21770303 - 21770274
Alignment:
| Q |
62 |
tttgtgagagtccataggttgtataatcat |
91 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
21770303 |
tttgtgagagtccataggttgtataatcat |
21770274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 17805 - 17845
Alignment:
| Q |
52 |
gtgctcatagtttgt-gagagtccataggttgtataatcat |
91 |
Q |
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||||||||||||||| || |||||||||||||||||||||| |
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| T |
17805 |
gtgctcatagtttgttgacagtccataggttgtataatcat |
17845 |
T |
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