View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12595_low_56 (Length: 248)

Name: NF12595_low_56
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12595_low_56
NF12595_low_56
[»] chr8 (21 HSPs)
chr8 (15-230)||(38453494-38453709)
chr8 (19-178)||(38633057-38633216)
chr8 (19-189)||(39848769-39848939)
chr8 (19-110)||(34539027-34539118)
chr8 (24-116)||(39848636-39848728)
chr8 (19-111)||(34533725-34533817)
chr8 (19-111)||(38632779-38632871)
chr8 (27-102)||(39848261-39848336)
chr8 (32-120)||(34549174-34549262)
chr8 (27-111)||(38632548-38632632)
chr8 (19-110)||(38453890-38453981)
chr8 (19-111)||(34533863-34533955)
chr8 (25-111)||(34916426-34916512)
chr8 (19-111)||(34544775-34544867)
chr8 (19-111)||(39848490-39848582)
chr8 (28-110)||(38632929-38633011)
chr8 (34-111)||(34533587-34533664)
chr8 (19-102)||(34916573-34916656)
chr8 (37-96)||(36951478-36951537)
chr8 (25-111)||(34916150-34916236)
chr8 (35-102)||(39848368-39848435)
[»] chr4 (3 HSPs)
chr4 (18-230)||(44474634-44474846)
chr4 (24-91)||(44474364-44474431)
chr4 (24-111)||(44474502-44474589)
[»] chr3 (1 HSPs)
chr3 (54-185)||(7045748-7045879)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 38453709 - 38453494
Alignment:
Q  15 gatcatgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgac 114  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  38453709 gatcatgagttgggctaatggtgatgtttttgatggttgttggtcaaatggacttatacatggatctggagtttttagatttgcaaatggggatgtcgac 38453610  T
Q  115 attggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggttgcatatgctcaaatggaaaagtga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38453609 attggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggttgcatatgctcaaatggaaaagtga 38453510  T
Q  215 tagagaaaggactgat 230  Q
    |||||||| |||||||    
T  38453509 tagagaaaagactgat 38453494  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 38633057 - 38633216
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacattg 118  Q
    |||| |||||||| ||||||||| ||  ||||||||||||||||||| |||||||||||||||||||||| ||||| ||| ||| |||||||||| ||||    
T  38633057 atgacttgggctactggtgatgtcttcgatggttgttggtcaaatgggcttatacatggatctggagtttatagatatgctaatggggatgtcgatattg 38633156  T
Q  119 gtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaa 178  Q
    ||||||||||||||||||  || |||| ||| |||||||||||||  ||| |||||||||    
T  38633157 gtaacttcaggagtaaacttctccatgtcaatggaaaatacacatgctcagatggaacaa 38633216  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 39848769 - 39848939
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacattg 118  Q
    |||||||||| |  ||||||||| ||  ||||||||||||||||||| ||||||||||||| |||||||| ||||| ||| ||  |||||||||| ||||    
T  39848769 atgagttgggttgttggtgatgtcttcgatggttgttggtcaaatggacttatacatggatatggagtttatagatatgctaacggggatgtcgatattg 39848868  T
Q  119 gtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggt 189  Q
    ||||||||||||||||||  || |||| ||| ||||||||||||   |||||||||||||| |||||||||    
T  39848869 gtaacttcaggagtaaacttctccatgacaatggaaaatacacacactcaaatggaacaatatacgagggt 39848939  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 34539118 - 34539027
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgt 110  Q
    |||| |||||||||||| ||||||||| ||||||||||||||||||| |||| |||||| |||||||||| ||||||||||||| |||||||    
T  34539118 atgaattgggctaatggcgatgtttttaatggttgttggtcaaatggacttagacatggttctggagtttatagatttgcaaatggggatgt 34539027  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 39848636 - 39848728
Alignment:
Q  24 ttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacat 116  Q
    |||||||||||||||||||||| ||||||||  ||||||||| |||| |||||||| |||||||| ||||||||||||| |||||||| ||||    
T  39848636 ttgggctaatggtgatgtttttgatggttgtatgtcaaatggacttagacatggatttggagtttatagatttgcaaatggggatgtctacat 39848728  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 34533817 - 34533725
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    ||||| ||||||||||||| ||||||  ||||||||||||||||||| |||| |||||||| |||||||| ||||||| ||||| ||||||||    
T  34533817 atgagatgggctaatggtgttgttttcgatggttgttggtcaaatggacttagacatggatatggagtttgtagatttacaaatggggatgtc 34533725  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 38632779 - 38632871
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    ||||||||||||| ||||||||| ||  |||||||||||||| |||| ||||||||||||| |||||||| ||||| ||||||| ||||||||    
T  38632779 atgagttgggctactggtgatgtcttcgatggttgttggtcagatggacttatacatggatttggagtttatagatctgcaaatggggatgtc 38632871  T

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Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 39848261 - 39848336
Alignment:
Q  27 ggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaat 102  Q
    ||||||||||||||||||| |||||||||||||||||| | || || |||||| ||||||||||||||||||||||    
T  39848261 ggctaatggtgatgtttttaatggttgttggtcaaatgactttgtatatggatatggagtttttagatttgcaaat 39848336  T

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Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 34549262 - 34549174
Alignment:
Q  32 atggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacattggt 120  Q
    |||||||||||||| ||||||||||||| ||||| |||| |||||||| |||||||| ||||||| ||||| || ||||| ||||||||    
T  34549262 atggtgatgtttttgatggttgttggtctaatggacttacacatggatatggagtttatagattttcaaatgggaatgtctacattggt 34549174  T

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Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 38632548 - 38632632
Alignment:
Q  27 ggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    ||||||||||||||||||  ||| ||||||||||||||| ||| ||||||||| |||||||||||||  ||||||| ||||||||    
T  38632548 ggctaatggtgatgttttggatgcttgttggtcaaatggacttctacatggatttggagtttttagagctgcaaatggggatgtc 38632632  T

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Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 38453981 - 38453890
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgt 110  Q
    ||||||||| || |||||||||||||| ||||||||||||||||| | ||| ||||||||| |||||||| ||||| || |||| |||||||    
T  38453981 atgagttggcctgatggtgatgtttttgatggttgttggtcaaatagacttgtacatggatatggagtttatagatctgtaaatggggatgt 38453890  T

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Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 34533955 - 34533863
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    |||| ||||| | |||||||||||||| ||||||||||||||||| | |||| | |||||| |||||||| ||||| ||||||| ||||||||    
T  34533955 atgaattgggttgatggtgatgtttttgatggttgttggtcaaatagacttaaagatggatatggagtttatagatatgcaaatggggatgtc 34533863  T

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Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 34916512 - 34916426
Alignment:
Q  25 tgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    |||||||| | |||||||||  |||||| |||||||||||| | || |||||||| |||||||| ||||||||||||| ||||||||    
T  34916512 tgggctaacgatgatgttttcgatggttattggtcaaatggacataaacatggatatggagtttatagatttgcaaatggggatgtc 34916426  T

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Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 34544867 - 34544775
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    |||| ||||| |||||||||||||||  |||| |||||||||||||| | || |||||||| |||||||| ||||||| ||||| || |||||    
T  34544867 atgaattgggttaatggtgatgttttcaatggatgttggtcaaatggacatagacatggatatggagtttatagattttcaaatgggaatgtc 34544775  T

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Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 39848490 - 39848582
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    |||||||||| || ||| ||||| || |||||||||||||||||||| |||  |||||||| |||||||| |||||  |||||| ||||||||    
T  39848490 atgagttgggatactggagatgtcttctatggttgttggtcaaatggacttgcacatggatatggagtttatagatccgcaaatggggatgtc 39848582  T

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Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 38632929 - 38633011
Alignment:
Q  28 gctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgt 110  Q
    ||||| |||||||||||| |||||| || ||||||||| |||| | |||||| |||||||| || |||||||||| |||||||    
T  38632929 gctaacggtgatgtttttgatggttatttgtcaaatggacttagatatggatttggagtttataaatttgcaaatggggatgt 38633011  T

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Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 34533664 - 34533587
Alignment:
Q  34 ggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    |||||||||||  |||||||||||| |||||| |||| ||||||||||||||||| || || ||| ||| ||||||||    
T  34533664 ggtgatgttttcgatggttgttggtaaaatggacttaaacatggatctggagtttatacatatgctaatggggatgtc 34533587  T

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Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 34916656 - 34916573
Alignment:
Q  19 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaat 102  Q
    |||| ||||| |||||||| | ||||  ||||||||||||||||||| |||  |||||||| |||||||| ||||| |||||||    
T  34916656 atgaattggggtaatggtgctattttcgatggttgttggtcaaatggactttcacatggatatggagtttatagatctgcaaat 34916573  T

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Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 36951478 - 36951537
Alignment:
Q  37 gatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagattt 96  Q
    ||||||||| |||||||||||| |||||| |||| ||| ||||||||||||| |||||||    
T  36951478 gatgtttttgatggttgttggttaaatggacttagacaaggatctggagtttatagattt 36951537  T

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Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 34916236 - 34916150
Alignment:
Q  25 tgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    |||||||| |||||||||||  |||||| |||||||||||| |  | |||||| | |||||||| ||||||||||||| | ||||||    
T  34916236 tgggctaacggtgatgttttcgatggttattggtcaaatggacagaaacatggctatggagtttatagatttgcaaatggagatgtc 34916150  T

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Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 39848368 - 39848435
Alignment:
Q  35 gtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaat 102  Q
    ||||||||||| |||||||| | |||| ||  ||||||||||||| |||||||| ||||| |||||||    
T  39848368 gtgatgtttttgatggttgtcgatcaattgcgcttatacatggatttggagtttatagatatgcaaat 39848435  T

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Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 44474634 - 44474846
Alignment:
Q  18 catgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacatt 117  Q
    |||||||||| ||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  44474634 catgagttggactaatggtgatgtttttgaaggttgctggtcaaatggacttatacatggatctggagtttttaaatttgcaaatggggatgtcgacatt 44474733  T
Q  118 ggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggttgcatatgctcaaatggaaaagtgatag 217  Q
    |||||||||||||||||||  ||| ||| |||||||| |||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||||||    
T  44474734 ggtaacttcaggagtaaacttctttatgacaacggaacatacacatgttcaaatgaaacaatgtacaagggttgcatatgctcaaatgaaaaagtgatag 44474833  T
Q  218 agaaaggactgat 230  Q
    |||||||||||||    
T  44474834 agaaaggactgat 44474846  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 44474364 - 44474431
Alignment:
Q  24 ttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagttttta 91  Q
    |||||||| ||| |||||||||  ||||| |||||||||||||||| ||||||||| |||||||||||    
T  44474364 ttgggctattggcgatgtttttattggttcttggtcaaatggccttgtacatggatttggagttttta 44474431  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 44474502 - 44474589
Alignment:
Q  24 ttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 111  Q
    ||||||||||| ||||  |||| ||||||||  ||||||||| |||| |||||||| |||||||| || ||||| |||| ||||||||    
T  44474502 ttgggctaatgatgatcattttaatggttgtctgtcaaatgggcttagacatggatttggagtttatacatttgtaaatggggatgtc 44474589  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 7045879 - 7045748
Alignment:
Q  54 ttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacattggtaacttcaggagtaaacaacttcatggcaacgga 153  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||||||| | |||||| ||||||||||||| | |||| |||  ||  ||| |||||||    
T  7045879 ttggtcaaatggacttatacatggatatggagtttttacatttgcaaatggagatgtcaacattggtaactttaagagtcaacttctctatgacaacgga 7045780  T
Q  154 aaatacacattttcaaatggaacaatgtacga 185  Q
    || | |||||  ||||||||||||||||||||    
T  7045779 aagtgcacatggtcaaatggaacaatgtacga 7045748  T

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