View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_59 (Length: 242)
Name: NF12595_low_59
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27685296 - 27685518
Alignment:
| Q |
1 |
caatcagtttttgaactgttctaataagttcagaaaccagatcaacaaaccaatttggaaatcagttcagaaaccagttctgtttgggaatttaaaattg |
100 |
Q |
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| T |
27685296 |
caatcagtttttgaactgttctaataagttcagaaaccagatcaacaaaccaatttggaaatcagttcagaaaccagttctgtttgggaatttaaaattg |
27685395 |
T |
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| Q |
101 |
cgtcaacgattcagaaaatcatttcagttcgcatggagtaccaaaactgattaaatttggttcgaatgaactggtttcttgttagttcggtttagttttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27685396 |
cgtcaacgattcagaaaatcatttcagttcgcatggagtaccaaaactgattaaatttggttcgaatgaactggtttcttgttagttcggtttagttttc |
27685495 |
T |
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| Q |
201 |
tttgttaaattgaaccatgaaca |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
27685496 |
tttgttaaattgaaccatgaaca |
27685518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 4053736 - 4053664
Alignment:
| Q |
139 |
taccaaaactgattaaatttggttcgaatgaactggtttcttgttagttcggtttagttttctttgttaaatt |
211 |
Q |
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||||||||||| |||| |||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
4053736 |
taccaaaactggttaagtttggttcgactgaattggtttcttgttagtccggtttagttttctttgttaaatt |
4053664 |
T |
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