View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_61 (Length: 240)
Name: NF12595_low_61
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 16240241 - 16240464
Alignment:
| Q |
1 |
tcactaccccctaaaattcaaggaataccaatgtgcagtctagggtatggactttgcgacgctaattgtgattcaaactgttgcgatgcaaagtgtactt |
100 |
Q |
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| T |
16240241 |
tcactaccccctaaaattcaaggaataccaatgtgcagtctagggtatggactttgcgacgctaattgtgattcaaactgttgcgatgcaaagtgtactt |
16240340 |
T |
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| Q |
101 |
ccgcagaaagagtctacaaaaatccttatgggaaatgtactaatatggccaacaaaaactattgtatttgttactatgatcacccttgaattgctcccaa |
200 |
Q |
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| T |
16240341 |
ccgcagaaagagtctacaaaaatccttatgggaaatgtactaatatggctaacaaaaactattgtatttgttactatgatcacccttgaattgctcccaa |
16240440 |
T |
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| Q |
201 |
tccttataaattgaaataatacgt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
16240441 |
tccttataaattgaaataatacgt |
16240464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 16267743 - 16267801
Alignment:
| Q |
26 |
taccaatgtgcagtctagggtatggactttgcgacgctaattgtgattcaaactgttgc |
84 |
Q |
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|||||| ||||||| | ||||||||| ||||||| | | |||||||||||||||||||| |
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| T |
16267743 |
taccaaggtgcagttttgggtatggaatttgcgaagatgattgtgattcaaactgttgc |
16267801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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