View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12595_low_9 (Length: 527)
Name: NF12595_low_9
Description: NF12595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12595_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 20 - 511
Target Start/End: Original strand, 1584424 - 1584914
Alignment:
| Q |
20 |
tgtagcaccactgttttgaggacaaagtgtttgtaattgtgaaagaaatgaagggtctattgaaggatcagctgcaccatttgtagtgaagtttctcaat |
119 |
Q |
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| T |
1584424 |
tgtagcaccactgttttgaggacaaagtgtttgtaattgtgaaagaaatgaagggtctattgaaggatcagctgcaccatttgtagtgaagtttctcaat |
1584523 |
T |
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| Q |
120 |
ctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacctataatatattcatagaatattaattaatgtgaatgcaacttcaatatgtaat |
219 |
Q |
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| T |
1584524 |
ctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacctataatatattcataaaatattaattaatgtga-tgcaacatcaatatgtaat |
1584622 |
T |
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| Q |
220 |
tctaaagtggtaaataaattttgaaaatatttagatctcttaccaacaagggtgacaaggtcttgagtgttaaggccttttgctgcaaacttttgtttct |
319 |
Q |
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| T |
1584623 |
tctagagtgataaataaatttcgaaaatatttagatctcttaccaacaagggtgacaaggtcttgagtgttaaggccttttgttgcaaacttttgtttct |
1584722 |
T |
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| Q |
320 |
gctcatcaacagaatcaccaggagcaggcaagttattgacatcagaagcctgtgacacgcgtccgtctctgcgcccggtaggaacttgccaactaagacc |
419 |
Q |
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| T |
1584723 |
gctcatcaacagaatcaccaggagcaggcaagttattgacatcagaagcctgtgacacgcgtccgtctctgcgcccggtaggaacttgccaactaagacc |
1584822 |
T |
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| Q |
420 |
accactctacaatgcatacataaatcaattataggtccatatttcaacaagttaagaacttattacactaagtaatatattcaactgatgtc |
511 |
Q |
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| T |
1584823 |
accactctacaatgcatacataaatcaattataggtccatatttcaacaagttaagaacttattacactaagtaatatattcaacttatgtc |
1584914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 1593459 - 1593216
Alignment:
| Q |
20 |
tgtagcaccactgttttgaggacaaagtgtttgtaattgtgaaagaaatgaagggtctattgaaggatcagctgcaccatttgtagtgaagtttctcaat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1593459 |
tgtagcaccactgttttgaggacaaagtgtttgtaattgtgaaagaaatgaagggtctattgaaggatcagctgcaccatttgtagtaaagtttctcaat |
1593360 |
T |
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| Q |
120 |
ctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacctataatatattcatagaatattaattaatgtgaatgcaacttcaatatgtaat |
219 |
Q |
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| T |
1593359 |
ctgttgctgaagaattgacatgctgttgtaccaattgtatgtccacctataatatattcataaaatattaattaatgtg-atgcaacatcaatatgtaat |
1593261 |
T |
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| Q |
220 |
tctaaagtggtaaataaattttgaaaatatttagatctcttacca |
264 |
Q |
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| T |
1593260 |
tctagagtgataaataaattttgaaaatatttagatctcttacca |
1593216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 258 - 484
Target Start/End: Complemental strand, 1592411 - 1592187
Alignment:
| Q |
258 |
cttaccaacaagggtgacaaggtcttgagtgttaaggccttttgctgcaaacttttgtttctgctcatcaacagaatcaccaggagcaggcaagttattg |
357 |
Q |
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| T |
1592411 |
cttaccaacaagggtgacaaggtcttgagtgttgaggccttttgctgcaaacttttgtttctgcacatcaacagaatcactaggagcgggcaagttattg |
1592312 |
T |
|
| Q |
358 |
acatcagaagcctgtgacacgcgtccgtctctgcgcccggtaggaacttgccaactaagaccaccactctacaatgcatacataaatcaattataggtcc |
457 |
Q |
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| T |
1592311 |
acgtcagaagcctgtgacacgcgtccgtctctacgtccagtaagaacttgccaactaagaccaccactctacaatgcatacataaatcaat--taggtcc |
1592214 |
T |
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| Q |
458 |
atatttcaacaagttaagaacttatta |
484 |
Q |
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| T |
1592213 |
atatttcaacaaattatgaactgatta |
1592187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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