View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12596_high_3 (Length: 449)
Name: NF12596_high_3
Description: NF12596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12596_high_3 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 46 - 428
Target Start/End: Original strand, 120898 - 121261
Alignment:
| Q |
46 |
agtgggtgattggattgtaatggtgttgtggaaatagatgaggcctcagcctaatttgtggatggtggctttaggttattatgttgaataatccnnnnnn |
145 |
Q |
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| T |
120898 |
agtgggtgattggattgtaatggtgttgtggaaatagatgaggcctcaacctgatttgtggatggtggcttaaggttattatgttgaataatcctttttc |
120997 |
T |
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| Q |
146 |
nnnnnnctctggatagagctgtttgctgaggttgatttttgtaagtagtgattggtattggtttgaccacttgaggagaaggagtacaaattcttttgga |
245 |
Q |
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| T |
120998 |
ttttttctctggatagagctgtttgctgaggttgatttttgtaagtagtgattggtattggtttgaccacttgaggagaaggagtacaaattc------- |
121090 |
T |
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| Q |
246 |
tgtagcaagttccttagttttgttaagaatccttttcctgttttgtcttttaagtgttgcatttgattgttggagcactgtttcatcatggctaacagat |
345 |
Q |
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| T |
121091 |
------------cttagttttgttaagaatcctttttctgttttctcttttaagtgttgcatttgattgttggagcactgtttcatcatggctaacagat |
121178 |
T |
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| Q |
346 |
ttgtttcgtttccctattggtttgatagttgaagtttgtgaattaatatttgatgttgaacctattttcttcccttctaaaag |
428 |
Q |
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| T |
121179 |
ttgtttcgtttccctattggtttgatagttgaagtttgtgaattaatatttgatgttgaacctattttcttcccttctaaaag |
121261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 119443 - 119478
Alignment:
| Q |
18 |
tgaagaagttgagttctctttttcacgaagtgggtg |
53 |
Q |
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| T |
119443 |
tgaagaagttgagttctctttttcacgaagtgggtg |
119478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 23690113 - 23690183
Alignment:
| Q |
263 |
ttttgttaagaatccttttcctgttttgtcttttaagtgttgcatttgattgttggagcactgtttcatca |
333 |
Q |
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| T |
23690113 |
ttttgttaagaatccttttcctgttgtctcttcctttggttgcatttgattgttgaagcactgtttcatca |
23690183 |
T |
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