View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12596_high_4 (Length: 410)
Name: NF12596_high_4
Description: NF12596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12596_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 394
Target Start/End: Complemental strand, 4082668 - 4082280
Alignment:
| Q |
9 |
cacagacacaaacacaaaccaacggaagccggagccggaagaaactttcaaatttcaatggctgttgtccagactcttgaagaccctcatgttgagatga |
108 |
Q |
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| T |
4082668 |
cacaaacacaaacacaaaccaatggaagccggagtcggaagaaactttcaaatttcaatggctgttgtccagactcttgaagaccctcatgttgagatga |
4082569 |
T |
|
| Q |
109 |
gggagtgttttcagatctttgaatctatctgtgtgagagttgttatggcatttggtgctctactctgttctcaacttgacaaagatgttttgcgatacct |
208 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4082568 |
gggagcgttttcagatctttgaatctatctgtgtgagagttgttatggcatttggtgctctactctgttctcaacttgacaaagatgttttgcgatacct |
4082469 |
T |
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| Q |
209 |
gaacgag---acaagtgttaaacacactgtgatatcagctgttgcagtcattcacgtgacctttcttttcttcactctctttgcctctctggacaggcca |
305 |
Q |
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| T |
4082468 |
gaacgagcacacaagtgttaaacacactgtgatatcagttgttgcagtcattcacgtgacctttcttttcttcactctctttgcctctctggacaggcca |
4082369 |
T |
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| Q |
306 |
aacaagaagcgtgttctccaaatgctcattattatggcgtttaatgctttgatttcgggattcatcgtcaaacttttgaaccatgattt |
394 |
Q |
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| T |
4082368 |
aacaacaagcgtgttctccaaatgctcattattatggtgcttaatgctttgatttcgggattcatcgtcaaacttttgaaccatgattt |
4082280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 391
Target Start/End: Complemental strand, 4092372 - 4091992
Alignment:
| Q |
14 |
acacaaacacaaaccaacggaagccggagccggaagaaactttcaaatttcaatggctgttgtccagactcttgaagaccctcatgttgagatgagggag |
113 |
Q |
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| T |
4092372 |
acacaaacacaaaccaatggaagccggagccggaagaaactttcaaatttcaatggatgttgtccagactcttgaagaccctcatgttgagatgagggag |
4092273 |
T |
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| Q |
114 |
tgttttcagatctttgaatctatctgtgtgagagttgttatggcatttggtgctctactctgttctcaacttgacaaagatgttttgcgatacctgaacg |
213 |
Q |
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| T |
4092272 |
cgttttaagatctttgaatctatctgtgtgagagttgttatggcatttggtgctctactctgttctcaacttgacaaagatgttttgcgatacctgaact |
4092173 |
T |
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| Q |
214 |
ag---acaagtgttaaacacactgtgatatcagctgttgcagtcattcacgtgacctttcttttcttcactctctttgcctctctggacaggccaaacaa |
310 |
Q |
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| T |
4092172 |
agcacataagtgttaaacaaactgtgatatcagctgttgcagtcattcacgtgacctttcttttcttcactctctttgcctctctggacaggccaaacaa |
4092073 |
T |
|
| Q |
311 |
gaagcgtgttctccaaatgctcattattatggcgtttaatgctttgatttcgggattcatcgtcaaacttttgaaccatga |
391 |
Q |
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| T |
4092072 |
caagcgtgttctccaaatgctcattattatggtgcttaatgctttgatttcgggattcatcgtcaaacttttgaaccatga |
4091992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 218 - 391
Target Start/End: Complemental strand, 4086605 - 4086432
Alignment:
| Q |
218 |
aagtgttaaacacactgtgatatcagctgttgcagtcattcacgtgacctttcttttcttcactctctttgcctctctggacaggccaaacaagaagcgt |
317 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4086605 |
aagtgttaaacacactgtgatatcagttgttgcagtcattcacgtgacctttcttttcttcactctctttgcctctctggacaggccaaacaacaagcgt |
4086506 |
T |
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| Q |
318 |
gttctccaaatgctcattattatggcgtttaatgctttgatttcgggattcatcgtcaaacttttgaaccatga |
391 |
Q |
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| T |
4086505 |
gttctccaaatgctcattattatggtgcttaatgctttgatttcgggattcatcgtcaaacttttgaaccatga |
4086432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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