View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12596_high_8 (Length: 279)
Name: NF12596_high_8
Description: NF12596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12596_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 32341776 - 32341517
Alignment:
| Q |
14 |
cacaatccaatttcaactaaaaagtgaaaaacatatgtaacccttgattgattaatcgactgagtgactaacatgatgcataaaaatctcttttttatgg |
113 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32341776 |
cacaatccaagttcaactaaaaagtgaaaaacatatgtaacccttgattgattaatcgactgagtgactaacatgatgcataaaaatatcttttttatgg |
32341677 |
T |
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| Q |
114 |
caggtactatcagaacaagagttctctttgatggtgatgtcccttctagtgataaatgctatcatagcaccactgataaaactcttgtttgatccttcag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32341676 |
caggtactatcagaacaagagttctctttgatggtgatgtcccttctagtgataaatgctatcatagcaccactgataaaactcttgtttgatccttcag |
32341577 |
T |
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| Q |
214 |
ccccatataattctggaaaaagatgttcaatacaacataccaagcgggattctgtgctcc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32341576 |
ccccatataattctggaaaaagatgttcaatacaacataccaagcgggattctgagctcc |
32341517 |
T |
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