View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12596_high_9 (Length: 261)
Name: NF12596_high_9
Description: NF12596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12596_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 52693683 - 52693436
Alignment:
| Q |
11 |
ttcactgggcatggttatgccaacggtgtcaggtatgttgagtgtagtagcccctgccttaataacttctccaagaatttgataaagaaattccctatcc |
110 |
Q |
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| T |
52693683 |
ttcactgggcatggttatgcccacggtgtcaggtatgttgagtgtagtagcccctgccttaataacttctccaagaatttgataaagaaattccctatcc |
52693584 |
T |
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| Q |
111 |
gacctggtatcatatc-----------------atatcacagaagaatgtgagtgttgaaatgaaatatataagacagtgagtgagtaaataccttccag |
193 |
Q |
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| T |
52693583 |
gacctggtatcatatcacagaagaatagttaaaatattacagta-acagtgagtgttgaaatgaaatatataaga---tgagtgagtgaataccttccag |
52693488 |
T |
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| Q |
194 |
catcttcagggctgaattcaacgtcttggcaacctaaactgcgtgcaaatgc |
245 |
Q |
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| T |
52693487 |
catcttcagggctgaattcaacgtcttggcaacctaaactgcgtgcaaatgc |
52693436 |
T |
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