View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12596_low_10 (Length: 354)
Name: NF12596_low_10
Description: NF12596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12596_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 152 - 342
Target Start/End: Original strand, 36330835 - 36331031
Alignment:
| Q |
152 |
gttagttagattggacgnnnnnnngttgcaccaaaacttaatatcattttatatatagaagatataatatggagatttaatcaaataactgacacatttg |
251 |
Q |
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| T |
36330835 |
gttagttagattggacgaaaaaaagttgcaccaaaacttaatattgttttatatatagaagatataatatggagatttaatcaaataactgacacatttg |
36330934 |
T |
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| Q |
252 |
aagaaccatgttttgttaaatagcttcatggttttgttacattatgaacaatgttttagttgac------attgtatatttatttatttatcagtga |
342 |
Q |
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| T |
36330935 |
aagaaccatgttttgttaaatagcttcatggttttgttacattatgaacaatgttttagttgacattgttattgtatatttatttatttatcagtga |
36331031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 36330701 - 36330767
Alignment:
| Q |
18 |
caggtagtatattacattaatctagcgtgcaacggccacttacacggtggtatatccttaaagttgc |
84 |
Q |
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| T |
36330701 |
caggtagtatattacattaatctagcgtgcaacggccacttacacggtggtatatccttaaagttgc |
36330767 |
T |
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