View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12596_low_14 (Length: 313)
Name: NF12596_low_14
Description: NF12596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12596_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 157 - 299
Target Start/End: Complemental strand, 3095838 - 3095696
Alignment:
| Q |
157 |
acatccctgatacctcttttattagtaattttatggacttaacttatcaacgaaaaaacattcgagaactaaaatgactatctaaaacatatttgaagac |
256 |
Q |
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| T |
3095838 |
acatccctgatacctcttttattagtaattttatggacttaacttatcaacgaaaaaacattcgagaactaaaatgactatctaaaacatatttgaagac |
3095739 |
T |
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| Q |
257 |
caaaatgactaatatataagacacttgtaaatgagtttgcagt |
299 |
Q |
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| T |
3095738 |
caaaatgactaatatataagacacttgtaaatgagtttgcagt |
3095696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 3096012 - 3095852
Alignment:
| Q |
17 |
aagacttccataaaagggcacattttttggagttaattcataatataataacattgattaataaaaatgacacag--tcattttggtcctgaatgtgtga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3096012 |
aagacttccataaaagggcacattttttggagttaattcataatataataacattgattaataaaaatgacacataatcattttggtcctgaatgtgtga |
3095913 |
T |
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| Q |
115 |
gacgttatcactattgttcctaaacgtattaaaattgcaaacacatccctgatacctcttt |
175 |
Q |
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| T |
3095912 |
gaggttatcactattgttcctaaacgtattaaaattgcaaacacatccctgatacctcttt |
3095852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 21867902 - 21867801
Alignment:
| Q |
93 |
cattttggtcc-tgaatgtgtgagacgttatcactattgttcctaaacgtattaaaattgcaaacacatccctgatacctcttttattagtaattttatg |
191 |
Q |
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||||||||||| ||||||| |||| |||| ||||||| || |||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||| |
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| T |
21867902 |
cattttggtccctgaatgtttgaggcgttgtcactatggtccctaaacgtattgaaattgcaaacacatccctagttcctcttttgttagtaattttatg |
21867803 |
T |
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| Q |
192 |
ga |
193 |
Q |
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|| |
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| T |
21867802 |
ga |
21867801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 21923763 - 21923662
Alignment:
| Q |
93 |
cattttggtcc-tgaatgtgtgagacgttatcactattgttcctaaacgtattaaaattgcaaacacatccctgatacctcttttattagtaattttatg |
191 |
Q |
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||||||||||| ||||||| |||| |||| ||||||| || |||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||| |
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| T |
21923763 |
cattttggtccctgaatgtttgaggcgttgtcactatggtccctaaacgtattgaaattgcaaacacatccctagttcctcttttgttagtaattttatg |
21923664 |
T |
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| Q |
192 |
ga |
193 |
Q |
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|| |
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| T |
21923663 |
ga |
21923662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 22010090 - 22010138
Alignment:
| Q |
146 |
aaattgcaaacacatccctgatacctcttttattagtaattttatggac |
194 |
Q |
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| T |
22010090 |
aaattgcaaacacatccctagaacctcttttgttagtaattttatggac |
22010138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 270
Target Start/End: Complemental strand, 19050913 - 19050735
Alignment:
| Q |
93 |
cattttggtcctgaatgtgtgagacgttatcactattgttcctaaacgtattaaaattgcaaacacatccctgatacc-tcttttattagtaattttatg |
191 |
Q |
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|||||||||| |||||||||||| || | |||| || | |||||| |||| || | |||||||||| || |||| |||| ||||||||| |||||| |
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| T |
19050913 |
cattttggtcttgaatgtgtgaggcgctgtcacaatactccctaaatttattgaagtggcaaacacatacccagtaccttcttctattagtaa-tttatg |
19050815 |
T |
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| Q |
192 |
gacttaacttatcaacgaaaaa-acattcgagaactaaaatgactatctaaaacatatttgaagaccaaaatgactaata |
270 |
Q |
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|||| || | | |||||||||| | ||||| ||||||| ||| || |||||| |||||||| ||||||||||| ||||| |
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| T |
19050814 |
gactaaattgaccaacgaaaaacagattcggtaactaaattgattacctaaaaaatatttgaggaccaaaatgattaata |
19050735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 243
Target Start/End: Complemental strand, 3185854 - 3185713
Alignment:
| Q |
102 |
cctgaatgtgtgagacgttatcactattgttcctaaacgtattaaaattgcaaacacatccctgatacctcttttattagtaattttatggacttaactt |
201 |
Q |
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|||||||||||||||| || | ||||| ||||| ||| |||||||||||| ||| || ||||| |||||| | |||| ||||||||||||| || | |
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| T |
3185854 |
cctgaatgtgtgagacattgttactatagttcccaaatgtattaaaattgtaaatacttccctagggcctcttctgttagaaattttatggactaaattg |
3185755 |
T |
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| Q |
202 |
atcaacgaaaaa-acattcgagaactaaaatgactatctaaaa |
243 |
Q |
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| T |
3185754 |
acaaacgaaaaacacattcgaggac-aaaacgactacctaaaa |
3185713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 24303887 - 24303980
Alignment:
| Q |
102 |
cctgaatgtgtgagacgttatcactattgttcctaaacgtattaaaattgcaaacacatccctgatacctcttttattagtaattttatggact |
195 |
Q |
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||||||||||| || |||| ||||||| || | |||| |||| |||||||||||||||| || | | |||||| ||||||||||||| |||| |
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| T |
24303887 |
cctgaatgtgtaaggcgttgtcactatagtccttaaatgtatcaaaattgcaaacacatttctagtgcttcttttgttagtaattttatagact |
24303980 |
T |
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