View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12596_low_2 (Length: 523)
Name: NF12596_low_2
Description: NF12596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12596_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 16 - 515
Target Start/End: Original strand, 31387754 - 31388253
Alignment:
| Q |
16 |
atttgtttgcaaacaagatggtgaggcagataatgaaactgaaaacgctataaagaaataccttaaaaaagttccagttcccaaatagacgagtgaagga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31387754 |
atttgtttgcaaacaagatggtgaggcagataacgaaactgaaaatgctataaagaaataccttaaaaaagttccagttcccaaatagatgagtgaagga |
31387853 |
T |
|
| Q |
116 |
agagctaagagcataacaaagcagtccaacaacagatgaaacaaaagacacaaatctccatatcattggctgtgtcacccatctcacaatttggttgagc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31387854 |
agagctaagagcataacaaagcagtccaacaacagatgaaacaaaagacacaaatctccatatcattggctgtgtcacccatctcacaatttggttgagc |
31387953 |
T |
|
| Q |
216 |
atggatctcatggtgtttcacaatcgagtgaggtttttgcttatacaacagagaaaaacccttttataggagagaagagatgagtagcgtttctctttcg |
315 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31387954 |
atggatctcatggtgttttacaatcgagtgaggtttttgcttatacaacagagaaaaaccgttttataggagagaagagatgagaagcgtttctctttcg |
31388053 |
T |
|
| Q |
316 |
atgaaatttcaaggaaattaatctgaagaatagaaaaggctcttcacccagcagtgtgttgcacttttctttgacaaataaacctaattcctcatctaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31388054 |
atgaaatttcaaggaaattaatctgaagaatagaaaaggctcttcacccagcagtgtgttgcacttttctttgacaaataaacctaattcctcatctaaa |
31388153 |
T |
|
| Q |
416 |
ttctgatgattataaggtccaatcattaactactaatcttcaaggacaactgtctaagtcttatttgcaatagaaattcaacaaaagattgtgatctgtg |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31388154 |
ttctgatgattataaggtccaatcattaactactaatcttcaaggacaactgtctaagtcttatttgcaatagaaattcaacaaaagattgtgatttgtg |
31388253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 31460318 - 31460697
Alignment:
| Q |
16 |
atttgtttgcaaacaagatggtgaggcagataatgaaactgaaaacgctataaagaaataccttaaaaaagttccagttcccaaatagacgagtgaagga |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
31460318 |
atttgtttgcaaacaagatggcgaggcagaaaatgaacctgaaaacgctatagagaagtaccttaaaaaagttccagttcccaaatagatgattgaagga |
31460417 |
T |
|
| Q |
116 |
agagctaagagcataacaaagcagt-ccaacaacagatgaaacaaaagacacaaatctccatatcattggctgtgtcacccatctcacaatttggttgag |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| | || |
|
|
| T |
31460418 |
agagctaagagcataacaaagcagtgccaacaacggatgaaacaaaacacacacatctccagatcattggctgtgtcacccatctcacaatttgggttag |
31460517 |
T |
|
| Q |
215 |
catggatctcatggtgtttcacaatcgagtgaggtttttgcttatacaacagagaaaaacccttttataggagagaagagatgagtagcgtttctctttc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
31460518 |
catggatctcatggtgtttcacaatcgagtgaggtttttgcttttacaacaaagaaaaaccgttttataggagagaagagatgagaagcatttctctttc |
31460617 |
T |
|
| Q |
315 |
gatgaaatttcaaggaaattaatctgaagaatagaaaaggctcttcacccagcagtgtgttgcacttttctttgacaaata |
395 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||| |
|
|
| T |
31460618 |
gacgaaatttcaaggaaattaatctgaagaatagaaaaggctcttta-ccagcagtgtgttgcagttttctttgacaaata |
31460697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 31384344 - 31384540
Alignment:
| Q |
24 |
gcaaacaagatggtgaggcagataatgaaactgaaaacgctataaagaaataccttaaaaaagttccagttcccaaatagacgagtgaaggaagagctaa |
123 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| | |||||||||||| ||| ||||||||||| |||||||||||| || ||||||||||||||| |
|
|
| T |
31384344 |
gcaaacaagattgtgaggaagataatgaaactgaaaatggtataaagaaataacttgaaaaagttccatttcccaaatagatgattgaaggaagagctaa |
31384443 |
T |
|
| Q |
124 |
gagcataacaaagcagtccaacaacagatgaaacaaaagacacaaatctccatatcattggctgtgtcacccatctcacaatttggttgagcatgga |
220 |
Q |
| |
|
|||||||| ||| ||| ||||||| |||||||||||| | ||||||||| ||||| |||| |||||||||||||||||||||| || |||| |||| |
|
|
| T |
31384444 |
gagcataataaaacagaccaacaattgatgaaacaaaacaaacaaatctcgatatctttggatgtgtcacccatctcacaatttcgtggagcgtgga |
31384540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 389 - 509
Target Start/End: Original strand, 31460734 - 31460854
Alignment:
| Q |
389 |
acaaataaacctaattcctcatctaaattctgatgattataaggtccaatcattaactactaatcttcaaggacaactgtctaagtcttatttgcaatag |
488 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31460734 |
acaaatacacctaattcttcatctaaattctgatgattataaggtccaatcattaactactgctcttcaaggacaactgtctaagtcttgtttgcaatag |
31460833 |
T |
|
| Q |
489 |
aaattcaacaaaagattgtga |
509 |
Q |
| |
|
| ||||||||| ||||||||| |
|
|
| T |
31460834 |
atattcaacaagagattgtga |
31460854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 31390783 - 31390975
Alignment:
| Q |
16 |
atttgtttgcaaacaagatggtgaggcagataatgaaactgaaaacgctataaagaaataccttaaaaaagttccagttcccaaatagacgagtgaagga |
115 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||||||||||||||||| | || ||||| | ||| || ||||||||||| ||||||||| | ||||||| |
|
|
| T |
31390783 |
atttgtttgcaaaaaagatggcaaggcaaataatgaaactgaaaacagtgtacagaaaaatctttaacaagttccagtttccaaatagatggttgaagga |
31390882 |
T |
|
| Q |
116 |
agagctaagagcataacaaagcagtccaacaacagatgaaacaaaagacacaaatctccatatcattggctgtgtcacccatctcacaatttg |
208 |
Q |
| |
|
||| || ||||||||||| || | |||| || |||||| |||| |||||||||||||| | ||||||| | | ||||||||||||||| |
|
|
| T |
31390883 |
agaacttagagcataacagaggaagccaataaaagatgatgtaaaactcacaaatctccatacctttggctgctttagccatctcacaatttg |
31390975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 31643855 - 31644005
Alignment:
| Q |
37 |
tgaggcagataatgaaactgaaaacgctataaagaaataccttaaaaaagttccagttcccaaatagacgagtgaaggaagagctaagagcataacaaag |
136 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||||| || | ||| || | ||||| | ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31643855 |
tgaggctgatgatgaaactgaaaacgctgtaaaggaaaatcttcaacagattccaatctccaaatagatagttgaaggaagagctaagagcataacaaag |
31643954 |
T |
|
| Q |
137 |
cagtccaacaacagatgaaacaaaagacacaaatctccatatcattggctg |
187 |
Q |
| |
|
|||||||||| ||||||| |||| |||||||||||||| | ||||||| |
|
|
| T |
31643955 |
tagtccaacaatagatgaagcaaagcccacaaatctccatacctttggctg |
31644005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 421 - 497
Target Start/End: Original strand, 31495543 - 31495619
Alignment:
| Q |
421 |
atgattataaggtccaatcattaactactaatcttcaaggacaactgtctaagtcttatttgcaatagaaattcaac |
497 |
Q |
| |
|
||||||||| |||||||| | ||||||||| | |||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
31495543 |
atgattatatggtccaattactaactactacttttcaaggacaactgtccaagtcttatttgcaatacaaattcaac |
31495619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 31483789 - 31483643
Alignment:
| Q |
41 |
gcagataatgaaactgaaaacgctataaagaaataccttaaaaaagttccagttcccaaatagacgagtgaaggaagagctaagagcataacaaagcagt |
140 |
Q |
| |
|
||||||||||||||||||||| | ||||||| || ||| || || |||| || ||| ||| | || ||||||||||||| ||||| ||| | || ||| |
|
|
| T |
31483789 |
gcagataatgaaactgaaaacagtgtaaagaattatcttcaacaaactccactttccacatatatgattgaaggaagagcttagagcgtaaaagagtagt |
31483690 |
T |
|
| Q |
141 |
ccaacaacagatgaaacaaaagacacaaatctccatatcattggctg |
187 |
Q |
| |
|
|||| || |||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
31483689 |
ccaataatggatgaaacaaaacacacaaatctccatatcattagctg |
31483643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 31475927 - 31476056
Alignment:
| Q |
48 |
atgaaactgaaaacgctataaagaaataccttaaaaaagttccagttcccaaatagacgagtgaaggaagagctaagagcataacaaagcagtccaacaa |
147 |
Q |
| |
|
|||||||||||||| | ||||||| || ||| || || |||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31475927 |
atgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtccaacag |
31476026 |
T |
|
| Q |
148 |
cagatgaaacaaaagacacaaatctccata |
177 |
Q |
| |
|
||| |||| |||| |||||||||||||| |
|
|
| T |
31476027 |
cagctgaagcaaagcccacaaatctccata |
31476056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 31395871 - 31395757
Alignment:
| Q |
41 |
gcagataatgaaactgaaaacgctataaagaaataccttaaaaaagttccagttcccaaatagacgagtgaaggaagagctaagagcataacaaagcagt |
140 |
Q |
| |
|
|||||| |||||||||||||| | ||||||| || ||| | || ||||||| ||||||||| || ||||||||||||| ||||||||||||| ||| |
|
|
| T |
31395871 |
gcagatgatgaaactgaaaactgtgtaaagaactatcttccacaatctccagtttccaaatagatgattgaaggaagagctgagagcataacaaacaagt |
31395772 |
T |
|
| Q |
141 |
ccaacaacagatgaa |
155 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
31395771 |
ccaacaacagctgaa |
31395757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 31416522 - 31416644
Alignment:
| Q |
38 |
gaggcagataatgaaactgaaaacgctataaagaaataccttaaaaaagttccagttcccaaatagacgagtgaaggaagagctaagagcataacaaagc |
137 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||| |||||| || || ||||| || ||||||||| | |||| |||||||| ||||||||||||| | |
|
|
| T |
31416522 |
gaggcagatgatgaaactggaaagagtataaagaattaccttcaacaaattccaatttccaaatagatggttgaaagaagagcttagagcataacaaatc |
31416621 |
T |
|
| Q |
138 |
agtccaacaacagatgaaacaaa |
160 |
Q |
| |
|
||||||||| ||| |||||||| |
|
|
| T |
31416622 |
agtccaacagcagcggaaacaaa |
31416644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 176
Target Start/End: Original strand, 31464940 - 31465077
Alignment:
| Q |
39 |
aggcagataatgaaactgaaaacgctataaagaaataccttaaaaaagttccagttcccaaatagacgagtgaaggaagagctaagagcataacaaagca |
138 |
Q |
| |
|
|||||||||| ||||||||| | | || ||| ||||||| || || ||||| || ||||||||| || ||||||||| ||| ||||| ||||| |||| |
|
|
| T |
31464940 |
aggcagataacgaaactgaacagacagtacagagataccttcaataaattccactttccaaatagatgattgaaggaagggcttagagcgtaacatagca |
31465039 |
T |
|
| Q |
139 |
gtccaacaacagatgaaacaaaagacacaaatctccat |
176 |
Q |
| |
|
||||||||| |||||||||||| ||| | |||||||| |
|
|
| T |
31465040 |
gtccaacaatggatgaaacaaaacacagatatctccat |
31465077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 40843309 - 40843438
Alignment:
| Q |
48 |
atgaaactgaaaacgctataaagaaataccttaaaaaagttccagttcccaaatagacgagtgaaggaagagctaagagcataacaaagcagtccaacaa |
147 |
Q |
| |
|
|||||||||||||| | ||||||| || ||| || || ||||| || ||||||||| ||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
40843309 |
atgaaactgaaaacagtgtaaagaattatcttcaacaaattccaatttccaaatagatagttgaaggaagagcttagagcataacaaaccagtccaacag |
40843408 |
T |
|
| Q |
148 |
cagatgaaacaaaagacacaaatctccata |
177 |
Q |
| |
|
||| |||| |||| |||||||||||||| |
|
|
| T |
40843409 |
cagctgaagcaaatcccacaaatctccata |
40843438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 31332243 - 31332192
Alignment:
| Q |
109 |
tgaaggaagagctaagagcataacaaagcagtccaacaacagatgaaacaaa |
160 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31332243 |
tgaaggaagagcttaaagcataacaaagcagtccaacaacagatgaagcaaa |
31332192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 31381028 - 31380977
Alignment:
| Q |
109 |
tgaaggaagagctaagagcataacaaagcagtccaacaacagatgaaacaaa |
160 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31381028 |
tgaaggaagagctcaaagcataacaaagcagtccaacaacagatgaagcaaa |
31380977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 31284761 - 31284695
Alignment:
| Q |
109 |
tgaaggaagagctaagagcataacaaagcagtccaacaacagatgaaacaaaagacacaaatctcca |
175 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| | |||||||| |||| |||||||||||| |
|
|
| T |
31284761 |
tgaaggaagagcttagagcataacaaagcagtccaatagcagatgaagcaaagcccacaaatctcca |
31284695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 31494128 - 31494221
Alignment:
| Q |
67 |
aaagaaataccttaaaaaagttccagttcccaaatagacgagtgaaggaagagctaagagcataacaaagcagtccaacaacagatgaaacaaa |
160 |
Q |
| |
|
|||||| |||||| || || ||||| || ||||||||| | |||| |||||||| |||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
31494128 |
aaagaattaccttcaacaaattccaatttccaaatagatggttgaacgaagagcttagagcataacaaagcaatccaataacagctgaaacaaa |
31494221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 31407399 - 31407526
Alignment:
| Q |
48 |
atgaaactgaaaacgctataaagaaataccttaaaaaagttccagttcccaaatagacgagtgaaggaagagctaagagcataacaaagcagtccaacaa |
147 |
Q |
| |
|
||||||||||||| | |||||||||| ||| || || ||||| || ||||||||| | ||||||||| ||| ||||||||||| |||| ||||||| |
|
|
| T |
31407399 |
atgaaactgaaaagagtgtaaagaaatatcttcaacaaattccaatttccaaatagatggttgaaggaagtgctgagagcataacagagcaatccaacag |
31407498 |
T |
|
| Q |
148 |
cagatgaaacaaaagacacaaatctcca |
175 |
Q |
| |
|
||| |||| |||| |||||||||||| |
|
|
| T |
31407499 |
cagctgaagcaaagcccacaaatctcca |
31407526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 31279532 - 31279572
Alignment:
| Q |
109 |
tgaaggaagagctaagagcataacaaagcagtccaacaaca |
149 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
31279532 |
tgaaggaagagctgagagcataacaaaccagtccaacaaca |
31279572 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 491
Target Start/End: Original strand, 40844021 - 40844059
Alignment:
| Q |
453 |
cttcaaggacaactgtctaagtcttatttgcaatagaaa |
491 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
40844021 |
cttcaatgacaactgtccaagtcttatttgcaatagaaa |
40844059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 31505945 - 31505989
Alignment:
| Q |
111 |
aaggaagagctaagagcataacaaagcagtccaacaacagatgaa |
155 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||||||| |||| |
|
|
| T |
31505945 |
aaggaagaactgagagcataacaaagcaatccaacaacagctgaa |
31505989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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