View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12596_low_21 (Length: 250)
Name: NF12596_low_21
Description: NF12596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12596_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 11095061 - 11095292
Alignment:
| Q |
1 |
ccaactcaatttgtcattataaataagacccttgatgagttaattcataaaacaaacttaattatagaattaaggcacaagacaaaa-aatgggttccat |
99 |
Q |
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| T |
11095061 |
ccaactcaatttctcattataaataggactcttgatgagttaattcataaaacaaacttaattatagaattaaggcacaagacaaaaaaatgggttccat |
11095160 |
T |
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| Q |
100 |
gagtgtagtaagggtagcatttttgtgtgcagtcttaatgcatgctgggtatgctcagcttagtccttcattttacagccaaacatgtccatttctatac |
199 |
Q |
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| T |
11095161 |
aaatgtactaggggtggtattttggtgtgcagtcttgatgcatgctgggtatgctcagcttagtccctcattttacagccaaacatgtccatttctatac |
11095260 |
T |
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| Q |
200 |
cctattgtgtttagagtcatatttgaggcttc |
231 |
Q |
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| T |
11095261 |
cctattgtgtttagagtcatatttgaggcttc |
11095292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 85 - 233
Target Start/End: Original strand, 11103284 - 11103435
Alignment:
| Q |
85 |
aaaaatgggttccatgagt---gtagtaagggtagcatttttgtgtgcagtcttaatgcatgctgggtatgctcagcttagtccttcattttacagccaa |
181 |
Q |
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|||||||||||||||| || ||| || |||| ||| ||| |||||||||||| |||||| | || ||||||||||||||||| ||||||||||||||| |
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| T |
11103284 |
aaaaatgggttccatgcgtattgtactaggggttgcactttggtgtgcagtcttgatgcatacaggatatgctcagcttagtccctcattttacagccaa |
11103383 |
T |
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| Q |
182 |
acatgtccatttctataccctattgtgtttagagtcatatttgaggcttccc |
233 |
Q |
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| T |
11103384 |
acatgtccatttctataccctattgtgtttagagtcatctatgaggcttccc |
11103435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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