View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12596_low_3 (Length: 492)
Name: NF12596_low_3
Description: NF12596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12596_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Original strand, 38265173 - 38265634
Alignment:
| Q |
19 |
agactcttcttcttcaacgatgcacactaacaattgggctgttttagtctgcacctctcgtttctggttcaattatcgacacatagccaacactttatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38265173 |
agactcttcttcttcaacgatgcacactaacaattgggctgttttagtctgcacctctcgtttctggttcaattatcgacacatagccaacactttatca |
38265272 |
T |
|
| Q |
119 |
atatatgcaaccgttaagcgactaggaatacccgacgaaagaatcatactcatgcttcctgatgacatgccttgtaactcaagaaacagctacccttccg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38265273 |
atatatgcaaccgttaagcgactaggaatacccgacgaaagaatcatactcatgcttcctgatgacatgccttgtaacgcaagaaacagctacccttccc |
38265372 |
T |
|
| Q |
219 |
aagtttttaataacgaaaaccacaaactcaacctctacggtgaaaaagtagaggttgattatcgtggctatgatgttaatgtggaaaactttctccgtct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38265373 |
aagtttttaataacgaaaaccacaaactcaacctctacggtgaaaaagtagaggttgattatcgtggctatgatgttaatgtggaaaactttctccgtct |
38265472 |
T |
|
| Q |
319 |
actaacaggtcgtcacgaaccaaacattccaaggtccaaacgacttctcagcgacgaaggaagtaacattcttttgtttatgtcaggtcatggaagtgat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38265473 |
actaacaggtcgtcacgaaccaaacattccaaggtccaaacgacttctcagcgacgaaggaagtaacattcttttgtttatgtcaggtcatggaagtgat |
38265572 |
T |
|
| Q |
419 |
caggttttgaagtttcaggagaaggaagatctttatagcaaagatttagctgatgcagtgaa |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38265573 |
caggttttgaagtttcaggagaaggaagatctttatagcaaagatttagctgatgctgtgaa |
38265634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 245 - 383
Target Start/End: Original strand, 32736728 - 32736866
Alignment:
| Q |
245 |
ctcaacctctacggtgaaaaagtagaggttgattatcgtggctatgatgttaatgtggaaaactttctccgtctactaacaggtcgtcacgaaccaaaca |
344 |
Q |
| |
|
|||||| | |||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
32736728 |
ctcaacttttacggtgaaaaagttgaggttggttatcgtggctatgatgttaatgtagaaaactttctccgtctactaacaggtcgtcatgagccaaact |
32736827 |
T |
|
| Q |
345 |
ttccaaggtccaaacgacttctcagcgacgaaggaagta |
383 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
32736828 |
ttccaaggtccaaacgacttcttagcgacaaaggaagta |
32736866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 270 - 438
Target Start/End: Original strand, 24198576 - 24198744
Alignment:
| Q |
270 |
aggttgattatcgtggctatgatgttaatgtggaaaactttctccgtctactaacaggtcgtcacgaaccaaacattccaaggtccaaacgacttctcag |
369 |
Q |
| |
|
|||| |||||||| |||||||| || ||||||||||||||| | || |||||||||||||||| || |||||||||||||||||||||| || |
|
|
| T |
24198576 |
aggtagattatcggggctatgaagtaaatgtggaaaactttatgcgggtactaacaggtcgtcatgagaatgctgttccaaggtccaaacgacttcttag |
24198675 |
T |
|
| Q |
370 |
cgacgaaggaagtaacattcttttgtttatgtcaggtcatggaagtgatcaggttttgaagtttcagga |
438 |
Q |
| |
|
|| ||||||||| | |||||||| | |||| |||| |||||| | ||| || |||||||||||||||| |
|
|
| T |
24198676 |
tgatgaaggaagtcatattcttttatatatgacagggcatggaggggatgagtttttgaagtttcagga |
24198744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 24196572 - 24196623
Alignment:
| Q |
35 |
acgatgcacactaacaattgggctgttttagtctgcacctctcgtttctggt |
86 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24196572 |
acgatgcacactaataattgggctgttttagtctgcacctctcgtttctggt |
24196623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 24197031 - 24197140
Alignment:
| Q |
131 |
gttaagcgactaggaatacccgacgaaagaatcatactcatgcttcctgatgacatgccttgtaactcaagaaacagctacccttccgaagtttttaata |
230 |
Q |
| |
|
|||||||| ||||||||||| || || || |||||||||||| | | ||||||||| | ||||| ||||||||| |||||| || |||||||||||| |
|
|
| T |
24197031 |
gttaagcggctaggaatacctgatgagaggatcatactcatgttagcagatgacatggcatgtaatgcaagaaacaagtaccctgcccaagtttttaata |
24197130 |
T |
|
| Q |
231 |
acgaaaacca |
240 |
Q |
| |
|
| |||||||| |
|
|
| T |
24197131 |
atgaaaacca |
24197140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University