View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12596_low_4 (Length: 453)
Name: NF12596_low_4
Description: NF12596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12596_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 38028943 - 38029049
Alignment:
| Q |
1 |
cagcaatgaaatccaaatcaaacgaccacaatgcaaacaggcatgaactcaataatcgccgcaacattctcaccaataatcaaacacaaaacgcaaaaaa |
100 |
Q |
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| T |
38028943 |
cagcaatgaaatccaaatcaaacgaccacaatgcaaacaggcatgaactcaacaatcgccgcaacagtctcaccaataatcaaacacaaaacgcaaaaaa |
38029042 |
T |
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| Q |
101 |
ctgcaca |
107 |
Q |
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||||||| |
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| T |
38029043 |
ctgcaca |
38029049 |
T |
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Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 38029127 - 38029198
Alignment:
| Q |
184 |
ccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgatctaatagaattttac |
255 |
Q |
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| T |
38029127 |
ccagagttttcaagagccaagtgattatagtggttgattcgtttagacaaagttgatctaatagaaatttac |
38029198 |
T |
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Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 31574789 - 31574877
Alignment:
| Q |
184 |
ccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgatctaatagaattttacgaagtgaaaagagaaac |
272 |
Q |
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| T |
31574789 |
ccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgttgttatagaaatttatgaagtgaaaagagaaac |
31574877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 31574623 - 31574713
Alignment:
| Q |
21 |
aacgaccacaatgcaaacaggcatgaactcaataatcgccgcaacattctcaccaataatcaaacacaaaacgcaaaaaactgcacagaac |
111 |
Q |
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| T |
31574623 |
aacgaccacaatgcaaacaggcatgaactcaacactcgccccaacaatctccccaataatcaaacactaaacacaaaaaactgcacagaac |
31574713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 6509593 - 6509679
Alignment:
| Q |
186 |
agagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgatctaatagaattttacgaagtgaaaagagaaac |
272 |
Q |
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| T |
6509593 |
agagttttcaagagccaagtgattatagtggttgattcgtttagacaaagttgttgttatagaaatttatgaagtgaaaagagaaac |
6509679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 6509418 - 6509512
Alignment:
| Q |
21 |
aacgaccacaatgcaaacaggcatgaactcaataatcgccgcaacattctcaccaataatcaaacac----aaaacgcaaaaaactgcacagaac |
111 |
Q |
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| T |
6509418 |
aacgaccacaatgcaaacaggcatgaactcaacagtcgctccaacaatctcaccaataatcaaacactaaataaacacaaaaaactgcacagaac |
6509512 |
T |
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