View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_high_15 (Length: 339)
Name: NF12597_high_15
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 1081959 - 1081670
Alignment:
| Q |
18 |
gacatcaacatgcatcttcatcactcaaggaaagaatatttggcttttcggcagacgctatgcctataacatggagaagtcaat---caatttctttcaa |
114 |
Q |
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| T |
1081959 |
gacatcaacatgcatcttcatcactcaaggaaagaatattaggcttttcggcagacgctatgcctataacatggagaagtgaatcaacaatttctttcaa |
1081860 |
T |
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| Q |
115 |
acgattccaaatgca-gttttgcggaatcaagtgtgttggagagaagcatcgatactgtaaccggtcctacgcctccaggaaacggagtaatggctgatg |
213 |
Q |
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| T |
1081859 |
acgattcgaaatgcacgttttgcggaatcaagtgtgttggagagaaacatcgatactgtaa--------acgcctccaggaaccggagtaatggctgatg |
1081768 |
T |
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| Q |
214 |
ccattttccatccttgtaccaatttagggtcatactatttttaaggccagcaggttagggcactaacgtgtcttttcttttccctaattgtcatgttttc |
313 |
Q |
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| T |
1081767 |
ccattttccatccttgtaccaatttagggtcatactattt--------------ttagggcactaacgtgtcttttcttttccctaattgtcatgttttc |
1081682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 1043293 - 1043162
Alignment:
| Q |
86 |
acatggagaagtcaatcaatttctttcaaacgattccaaatgca-gttttgcggaatcaagtgtgttggagagaagcatcgatactgtaaccggtcctac |
184 |
Q |
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| T |
1043293 |
acatggagaagtcaatcaatttatttcaaacaattccgaatgcacgttttgcagaatcaagtgtgttggagagaagcatcgatactgtaacaggtcctat |
1043194 |
T |
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| Q |
185 |
gcctccaggaaacggagtaatggctgatgcca |
216 |
Q |
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| T |
1043193 |
gcctccaggaaccggagtaatggctgatgcca |
1043162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 1043326 - 1043293
Alignment:
| Q |
19 |
acatcaacatgcatcttcatcactcaaggaaaga |
52 |
Q |
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| T |
1043326 |
acatcaacatgcatcttcatcactcaatgaaaga |
1043293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 18379452 - 18379391
Alignment:
| Q |
19 |
acatcaacatgcatcttcatcactcaaggaaagaatatttggcttttcggcagacgctatgc |
80 |
Q |
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| T |
18379452 |
acatcaacatgcatcttcatcactcaagaaaataacatttgacttttcagaagacgcaatgc |
18379391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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