View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12597_high_17 (Length: 330)

Name: NF12597_high_17
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12597_high_17
NF12597_high_17
[»] chr8 (17 HSPs)
chr8 (1-312)||(35872686-35873019)
chr8 (2-104)||(30480812-30480914)
chr8 (18-206)||(40877901-40878092)
chr8 (1-112)||(36865453-36865564)
chr8 (138-206)||(30481028-30481096)
chr8 (1-54)||(13858792-13858845)
chr8 (1-54)||(14419499-14419552)
chr8 (11-112)||(5623056-5623155)
chr8 (136-206)||(36865331-36865402)
chr8 (1-41)||(31162200-31162240)
chr8 (151-206)||(13858968-13859023)
chr8 (1-48)||(17847508-17847555)
chr8 (138-206)||(5623229-5623294)
chr8 (1-41)||(6375976-6376016)
chr8 (1-41)||(15186018-15186058)
chr8 (1-33)||(27107205-27107237)
chr8 (1-33)||(33541696-33541728)
[»] chr4 (24 HSPs)
chr4 (1-312)||(24446887-24447220)
chr4 (1-206)||(19095696-19095907)
chr4 (2-113)||(12396154-12396265)
chr4 (2-113)||(12401116-12401227)
chr4 (1-112)||(18537779-18537890)
chr4 (1-127)||(33415795-33415919)
chr4 (2-112)||(38928487-38928595)
chr4 (1-86)||(52043738-52043823)
chr4 (1-76)||(13543904-13543979)
chr4 (136-206)||(12401277-12401347)
chr4 (9-67)||(18535145-18535203)
chr4 (138-207)||(38928648-38928716)
chr4 (138-206)||(12396337-12396405)
chr4 (137-207)||(13543807-13543876)
chr4 (11-112)||(37313384-37313482)
chr4 (136-206)||(37313531-37313600)
chr4 (167-206)||(33415980-33416019)
chr4 (169-206)||(18537992-18538029)
chr4 (1-33)||(6132866-6132898)
chr4 (1-114)||(13072279-13072392)
chr4 (9-41)||(15032852-15032884)
chr4 (1-41)||(25357622-25357662)
chr4 (1-41)||(36378277-36378317)
chr4 (1-33)||(38270294-38270326)
[»] chr2 (20 HSPs)
chr2 (9-206)||(45239297-45239500)
chr2 (3-206)||(31733075-31733284)
chr2 (1-113)||(17848952-17849064)
chr2 (1-127)||(17848268-17848392)
chr2 (12-112)||(28196475-28196573)
chr2 (136-206)||(38414497-38414567)
chr2 (138-207)||(28196333-28196402)
chr2 (9-83)||(11578420-11578494)
chr2 (138-205)||(17848812-17848879)
chr2 (11-112)||(38414348-38414446)
chr2 (138-206)||(17848155-17848222)
chr2 (1-48)||(35028479-35028526)
chr2 (1-48)||(20589560-20589608)
chr2 (1-48)||(35107200-35107247)
chr2 (9-48)||(45156951-45156990)
chr2 (10-83)||(13828657-13828729)
chr2 (2-70)||(37963236-37963304)
chr2 (1-37)||(17897550-17897586)
chr2 (1-41)||(20146915-20146955)
chr2 (1-33)||(22163255-22163287)
[»] chr1 (22 HSPs)
chr1 (1-206)||(50076982-50077193)
chr1 (1-207)||(12302820-12303033)
chr1 (1-112)||(11457785-11457896)
chr1 (2-112)||(50079132-50079242)
chr1 (97-206)||(50307971-50308077)
chr1 (138-206)||(40133658-40133726)
chr1 (1-112)||(40133799-40133906)
chr1 (138-206)||(17318612-17318680)
chr1 (1-83)||(49495509-49495591)
chr1 (11-83)||(17318784-17318854)
chr1 (138-206)||(50079315-50079383)
chr1 (1-48)||(27916421-27916468)
chr1 (1-83)||(26613550-26613631)
chr1 (1-74)||(26979835-26979906)
chr1 (1-83)||(8347580-8347661)
chr1 (168-206)||(14184109-14184147)
chr1 (168-206)||(16430823-16430861)
chr1 (1-43)||(42922163-42922205)
chr1 (12-112)||(50307868-50307965)
chr1 (171-207)||(17352796-17352832)
chr1 (1-37)||(43104094-43104130)
chr1 (1-33)||(50248882-50248914)
[»] chr7 (19 HSPs)
chr7 (6-206)||(4296249-4296455)
chr7 (1-112)||(9680684-9680795)
chr7 (1-127)||(11355115-11355239)
chr7 (13-112)||(20137429-20137526)
chr7 (138-206)||(20137600-20137668)
chr7 (97-206)||(42222888-42223001)
chr7 (1-112)||(42223028-42223137)
chr7 (1-76)||(9678960-9679035)
chr7 (162-206)||(24817865-24817909)
chr7 (137-207)||(9678863-9678932)
chr7 (146-206)||(9680542-9680601)
chr7 (138-206)||(11355010-11355077)
chr7 (1-41)||(7188484-7188524)
chr7 (2-37)||(6048617-6048652)
chr7 (12-48)||(6067511-6067547)
chr7 (9-41)||(20091857-20091889)
chr7 (1-41)||(22828941-22828981)
chr7 (170-206)||(24815587-24815623)
chr7 (1-33)||(44724528-44724560)
[»] chr3 (32 HSPs)
chr3 (1-112)||(880758-880869)
chr3 (1-112)||(6231289-6231400)
chr3 (2-113)||(53591034-53591145)
chr3 (1-112)||(3306639-3306750)
chr3 (1-112)||(3314525-3314635)
chr3 (1-107)||(47149206-47149313)
chr3 (1-113)||(890077-890189)
chr3 (1-112)||(51675061-51675172)
chr3 (1-112)||(31151189-31151298)
chr3 (97-206)||(47149341-47149457)
chr3 (137-206)||(3306518-3306587)
chr3 (137-206)||(3314404-3314473)
chr3 (143-206)||(6231169-6231232)
chr3 (1-121)||(54691879-54692000)
chr3 (136-206)||(890238-890308)
chr3 (137-203)||(51675224-51675290)
chr3 (136-206)||(53590911-53590981)
chr3 (9-54)||(28761742-28761787)
chr3 (1-41)||(25635331-25635371)
chr3 (141-206)||(54692046-54692111)
chr3 (12-83)||(1620710-1620781)
chr3 (1-41)||(23633371-23633411)
chr3 (1-41)||(53597152-53597192)
chr3 (146-201)||(880950-881004)
chr3 (1-48)||(26762869-26762916)
chr3 (1-43)||(41849051-41849093)
chr3 (3-83)||(1618966-1619046)
chr3 (169-206)||(23636727-23636764)
chr3 (9-41)||(13419787-13419819)
chr3 (1-33)||(28180943-28180975)
chr3 (1-33)||(47701901-47701933)
chr3 (1-33)||(53468761-53468793)
[»] chr5 (15 HSPs)
chr5 (1-127)||(1189922-1190049)
chr5 (1-112)||(25903963-25904074)
chr5 (2-108)||(31472922-31473026)
chr5 (1-112)||(36208440-36208551)
chr5 (1-163)||(9020025-9020193)
chr5 (1-206)||(16092512-16092744)
chr5 (138-207)||(1190086-1190155)
chr5 (1-99)||(29748215-29748312)
chr5 (137-206)||(36208298-36208367)
chr5 (138-206)||(31473082-31473150)
chr5 (1-74)||(42770672-42770745)
chr5 (138-203)||(25903825-25903889)
chr5 (1-37)||(2144900-2144936)
chr5 (1-33)||(2723906-2723938)
chr5 (1-33)||(17072822-17072854)
[»] chr6 (16 HSPs)
chr6 (1-112)||(3390274-3390385)
chr6 (9-202)||(3234046-3234242)
chr6 (39-127)||(3396201-3396289)
chr6 (1-54)||(15346344-15346397)
chr6 (1-113)||(32447624-32447734)
chr6 (138-206)||(3396095-3396163)
chr6 (1-53)||(15366990-15367042)
chr6 (1-112)||(26945045-26945154)
chr6 (138-206)||(32447807-32447875)
chr6 (2-102)||(19696347-19696446)
chr6 (145-206)||(3390132-3390193)
chr6 (1-41)||(28038013-28038053)
chr6 (151-206)||(15719423-15719478)
chr6 (2-83)||(15719571-15719652)
chr6 (1-33)||(3630172-3630204)
chr6 (1-33)||(13057168-13057200)
[»] scaffold0004 (2 HSPs)
scaffold0004 (11-81)||(79761-79829)
scaffold0004 (140-207)||(79660-79726)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-129)||(85088-85211)
[»] scaffold0224 (1 HSPs)
scaffold0224 (1-43)||(16126-16168)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-33)||(35588-35620)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 35872686 - 35873019
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  35872686 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccataaaaatatgttttatttttattcttctgcgcgaaatcg 35872785  T
Q  101 tgctccgatttt----------------ttacaaatgaaagtgtc------gctccgaaaaatcgtgctccaattttaacagcttcaacaaacttcaatt 178  Q
    ||||||||||||                |||| ||||||||||||      |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  35872786 tgctccgattttgccatgctccgattttttacgaatgaaagtgtcaattctgctccgaaaaatcgtgctccaattttgacagcttcagcaaacttcaatt 35872885  T
Q  179 tatccaattttgagtcactttcacaacacggttaaaacttaaattttttcattggttgcaatcaaactcgatgcctgaagtctacaacactctcacaaag 278  Q
    ||| |||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35872886 tattcaattttgagtccctttcacaacatggttaaaacttaagttttttcattagttgcaatcaaactcgatgcctgaagtctacaacactctcacaaag 35872985  T
Q  279 caatagtcatttgctttagattgaatgttgaacc 312  Q
    ||||||||||||||||||||||||||||||||||    
T  35872986 caatagtcatttgctttagattgaatgttgaacc 35873019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 30480812 - 30480914
Alignment:
Q  2 atacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  30480812 atacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcaagcccataaaaatacgttttatttttattcttctgcgcgaaatcgt 30480911  T
Q  102 gct 104  Q
    |||    
T  30480912 gct 30480914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 40877901 - 40878092
Alignment:
Q  18 tatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgtgctccgattttttaca 117  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||  |||||||||||||||| | |   ||||||| ||||||| ||||||||||||||     
T  40877901 tatagtaaaagaatccctcataaattggaacaaaatcaggccca--aaaatacgttttatttatctgactctgcgcaaaatcgtactccgattttttacg 40877998  T
Q  118 aatgaaagtgtc------gctccgaaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||||||| |      ||| | |||||||||||||| ||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||||    
T  40877999 aatgaaagtgccaattctgcttcaaaaaatcgtgctccgattttgacagcttcagcaaac-tcaatttctccaattttgagtcactttcacaaca 40878092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 36865564 - 36865453
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  36865564 gatacaatgtctatatttatagtaaaaacatctatcataaattggaaacaaatcaagcccataaaaatacgttttatttttattcttcttcgcgaaatcg 36865465  T
Q  101 tgctccgatttt 112  Q
    |||||| |||||    
T  36865464 tgctccaatttt 36865453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 30481028 - 30481096
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||||||||| ||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  30481028 aaatcgtgctccgattttgacaacttcagcaaacttcaatttctccaattttgagtcactttcacaaca 30481096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13858792 - 13858845
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatc 54  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| |||||    
T  13858792 gatacaaagtctatatttatagtaaaagtatccctcataaattggaacaaaatc 13858845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14419499 - 14419552
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatc 54  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||| |||||    
T  14419499 gatacaatgtctatatttatagtaaaagtatcactcataaattggaacaaaatc 14419552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 5623056 - 5623155
Alignment:
Q  11 ctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgtgctccgatt 110  Q
    |||||||||||||||||| ||| ||||||||||||||| |||| | |||||  |||||| ||||||||||  |   ||||||| ||||||| ||||||||    
T  5623056 ctatatttatagtaaaagaatcactcataaattggaacaaaattaggccca--aaaatatgttttattttgctgactctgcgcaaaatcgtactccgatt 5623153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 36865402 - 36865331
Alignment:
Q  136 aaaaatcgtgctccaattttaacagcttcaacaaa-cttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||||||| |||| ||||| ||| ||||| |||| ||||||||| ||||||||| ||||||||||||||||    
T  36865402 aaaaatcgtactccgattttgacaacttcagcaaaacttcaatttctccaattttaagtcactttcacaaca 36865331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31162240 - 31162200
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaa 41  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  31162240 gatacaaggtctatatttatagtaaaagtatccctcataaa 31162200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 13858968 - 13859023
Alignment:
Q  151 attttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||| |||| |||||||||||| ||||| ||||||||| ||||| ||||||||||    
T  13858968 attttgacagattcaacaaactttaatttctccaatttttagtcattttcacaaca 13859023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17847555 - 17847508
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaac 48  Q
    ||||||| |||||||||||||||||||| |||||||| || |||||||    
T  17847555 gatacaaggtctatatttatagtaaaagtatccctcaaaatttggaac 17847508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 5623229 - 5623294
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||| ||||| ||||| ||||||||| ||||||| ||||| |||||||||||   ||||||||||||    
T  5623229 aaatcgggctccgattttgacagcttcagcaaactttaatttctccaattttga---actttcacaaca 5623294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6376016 - 6375976
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaa 41  Q
    ||||||| |||||||||||||||||||| ||||| ||||||    
T  6376016 gatacaaggtctatatttatagtaaaagtatcccgcataaa 6375976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15186018 - 15186058
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaa 41  Q
    ||||||| || ||||||||||||||||| ||||||||||||    
T  15186018 gatacaaagtttatatttatagtaaaagtatccctcataaa 15186058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27107205 - 27107237
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  27107205 gatacaatgtctatatttatagtaaaagaatcc 27107237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33541696 - 33541728
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  33541696 gatacaatgtctatatttatagtaaaagaatcc 33541728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 24446887 - 24447220
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  24446887 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccataaaaatatgttttatttttattcttctgcgcgaaatcg 24446986  T
Q  101 tgctccgatttt----------------ttacaaatgaaagtgtc------gctccgaaaaatcgtgctccaattttaacagcttcaacaaacttcaatt 178  Q
    ||||||||||||                |||| ||||||||||||      |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  24446987 tgctccgattttgccatgctccgattttttacgaatgaaagtgtcaattctgctccgaaaaatcgtgctccaattttgacagcttcagcaaacttcaatt 24447086  T
Q  179 tatccaattttgagtcactttcacaacacggttaaaacttaaattttttcattggttgcaatcaaactcgatgcctgaagtctacaacactctcacaaag 278  Q
    ||| |||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24447087 tattcaattttgagtccctttcacaacatggttaaaacttaagttttttcattagttgcaatcaaactcgatgcctgaagtctacaacactctcacaaag 24447186  T
Q  279 caatagtcatttgctttagattgaatgttgaacc 312  Q
    ||||||||||||||||||||||||||||||||||    
T  24447187 caatagtcatttgctttagattgaatgttgaacc 24447220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 19095907 - 19095696
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  19095907 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcaggcccataaaaatacgttttatttttattcttctccgcgaaatcg 19095808  T
Q  101 tgctccgattttttacaaat-gaaagtgtc------gctccgaaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagt 193  Q
    |||||||||||||||| ||| |||||||||      ||||| |||| ||||||||| ||||| ||| ||||| ||||||||||||| ||||||||| | |    
T  19095807 tgctccgattttttacgaatggaaagtgtcaattctgctcc-aaaagtcgtgctccgattttgacaacttcagcaaacttcaatttctccaattttaaat 19095709  T
Q  194 cactttcacaaca 206  Q
    |||||||||||||    
T  19095708 cactttcacaaca 19095696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 12396154 - 12396265
Alignment:
Q  2 atacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgt 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||||||||||||||||||||| |||| ||||    
T  12396154 atacaatgtctatatttatagtaaaagcatccctcataaactggaaccaaatcaggctcataaaaatacgttttatttttattcttctgcacgaattcgt 12396253  T
Q  102 gctccgattttt 113  Q
    |||| |||||||    
T  12396254 gctctgattttt 12396265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 12401116 - 12401227
Alignment:
Q  2 atacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgt 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||||||||||||||||||||| |||| ||||    
T  12401116 atacaatgtctatatttatagtaaaagcatccctcataaactggaaccaaatcaggctcataaaaatacgttttatttttattcttctgcacgaattcgt 12401215  T
Q  102 gctccgattttt 113  Q
    |||| |||||||    
T  12401216 gctctgattttt 12401227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 18537779 - 18537890
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    |||||||  ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |||| ||||||    
T  18537779 gatacaagatctatatttatagtaaaagcatcactcataaattggaacaaaatcatgcccataaaaatacgttttatttttatgcttccgcgcaaaatcg 18537878  T
Q  101 tgctccgatttt 112  Q
    | ||||||||||    
T  18537879 tactccgatttt 18537890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 33415795 - 33415919
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||| | |||||||| ||||||||  ||||||||||||||||||| |||||| |||||  |||||||||||||||||| |   ||||||| ||||||    
T  33415795 gatacaaagcctatatttgtagtaaaaaaatccctcataaattggaacaaaatcaggccca--aaaatacgttttatttttctgactctgcgcaaaatcg 33415892  T
Q  101 tgctccgattttttacaaatgaaagtg 127  Q
    |||||||||||||||| ||| ||||||    
T  33415893 tgctccgattttttacgaattaaagtg 33415919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 38928487 - 38928595
Alignment:
Q  2 atacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgt 101  Q
    |||||| | |||||||||||||||||| ||||||||||||||||||| |||||| |||||  |||||||||||||||||| |   ||||||| |||||||    
T  38928487 atacaaagcctatatttatagtaaaagaatccctcataaattggaacaaaatcaggccca--aaaatacgttttatttttctgaatctgcgcaaaatcgt 38928584  T
Q  102 gctccgatttt 112  Q
     ||||||||||    
T  38928585 actccgatttt 38928595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 52043738 - 52043823
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatc-atgcccatcaaaatacgttttatttttattct 86  Q
    ||||||| ||||||||||||||||||||||||||| | ||||||||| |||||| | |||||| |||||||||||||||||||||||    
T  52043738 gatacaaggtctatatttatagtaaaagcatccctaaaaaattggaa-caaatctaagcccataaaaatacgttttatttttattct 52043823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 13543979 - 13543904
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgtttta 76  Q
    |||||||  |||||||||||||||||| |||||||||||||||| ||||||||||  ||||| |||||||||||||    
T  13543979 gatacaagatctatatttatagtaaaaacatccctcataaattgaaaccaaatcaaacccataaaaatacgtttta 13543904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 12401277 - 12401347
Alignment:
Q  136 aaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||||||| |||| ||||| ||||||||| ||||||| ||||| ||||||||||||| ||||||||||||    
T  12401277 aaaaatcgtactccgattttgacagcttcagcaaacttgaatttctccaattttgagtaactttcacaaca 12401347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 18535145 - 18535203
Alignment:
Q  9 gtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaa 67  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||    
T  18535145 gtctatatttattgtaaaagcatccctcataaattggaacaaaatcaggcccataaaaa 18535203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 38928648 - 38928716
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaacac 207  Q
    |||||||||||| ||||| ||||||||| |||||| |||||| ||||||||||||||| |||||||||||    
T  38928648 aaatcgtgctccgattttgacagcttcagcaaact-caatttctccaattttgagtcaatttcacaacac 38928716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 12396337 - 12396405
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||| ||||| ||||| ||||||||| ||||||| ||||| ||||||||||||| ||||||||||||    
T  12396337 aaatcgggctccgattttgacagcttcagcaaacttgaatttctccaattttgagtaactttcacaaca 12396405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 13543876 - 13543807
Alignment:
Q  137 aaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaacac 207  Q
    ||||| ||||||| ||||| |||||||||||| |||| ||||| ||||||||||||||| |||||||||||    
T  13543876 aaaattgtgctccgattttgacagcttcaacatactt-aatttctccaattttgagtcattttcacaacac 13543807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 37313384 - 37313482
Alignment:
Q  11 ctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgtgctccgatt 110  Q
    |||||||||||||||||  |||||||| |||||| ||| |||||| |||||  || |||||||||||||||||  |||| ||| ||||||| ||||||||    
T  37313384 ctatatttatagtaaaaa-atccctcaaaaattgaaacaaaatcaggccca--aagatacgttttatttttatgattctacgcaaaatcgtactccgatt 37313480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 37313531 - 37313600
Alignment:
Q  136 aaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||||||| |||| ||||| ||||||||   |||||||||||| ||||||||||||||||||||||||||    
T  37313531 aaaaatcgtactccgattttgacagcttcgt-aaacttcaatttctccaattttgagtcactttcacaaca 37313600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 33415980 - 33416019
Alignment:
Q  167 caaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  33415980 caaatttcaatttctccaattttgagtcactttcacaaca 33416019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 18537992 - 18538029
Alignment:
Q  169 aacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  18537992 aacttcaatttcttcaattttgagtcactttcacaaca 18538029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6132898 - 6132866
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  6132898 gatacaatgtctatatttatagtaaaagaatcc 6132866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 13072279 - 13072392
Alignment:
Q  1 gatacaatgtctatatttatagta-aaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattct-tctgcgcgaaat 98  Q
    ||||||| || ||||| ||||||  |||||||||||||||||  ||||| |||||| |||||  |||||||| ||| |||||  ||| || |||  ||||    
T  13072279 gatacaaggtttatatctatagtggaaagcatccctcataaaaaggaacaaaatcaagccca--aaaatacgatttgttttttctctatcagcgaaaaat 13072376  T
Q  99 cgtgctccgatttttt 114  Q
    ||||||||||||||||    
T  13072377 cgtgctccgatttttt 13072392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 15032852 - 15032884
Alignment:
Q  9 gtctatatttatagtaaaagcatccctcataaa 41  Q
    |||||||||||||||||||| ||||||||||||    
T  15032852 gtctatatttatagtaaaagtatccctcataaa 15032884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25357662 - 25357622
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaa 41  Q
    ||||||| |||||||||||||||||||| ||||||| ||||    
T  25357662 gatacaaggtctatatttatagtaaaagtatccctcgtaaa 25357622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36378317 - 36378277
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaa 41  Q
    ||||||| |||||||||||||||||||| | ||||||||||    
T  36378317 gatacaaagtctatatttatagtaaaagtaaccctcataaa 36378277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38270294 - 38270326
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  38270294 gatacaatgtctatatttatagtaaaagaatcc 38270326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 45239297 - 45239500
Alignment:
Q  9 gtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgtgctccga 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  45239297 gtctatatttatagtaaaagcatccctcataaattggaactaaatcaggcccataaaaatacgttttatttttattcttctgcgtgaaatcgtgctccga 45239396  T
Q  109 ttttttacaaatgaaagtgtc------gctccgaaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcac 202  Q
    |||||||| |||||||||| |      |||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||    
T  45239397 ttttttacgaatgaaagtgccaattctgctccgaaaaatcgtgctccgattttgacagcttcagcaaacttcaatttctccaattttgagtcactttcac 45239496  T
Q  203 aaca 206  Q
    ||||    
T  45239497 aaca 45239500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 31733075 - 31733284
Alignment:
Q  3 tacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgtg 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| | ||||||||    
T  31733075 tacaaagtctatatttatagtaaaagcatccctcataaattggaaccaaatcaggcccataaaaatacgttttatttttactcttctgcacaaaatcgtg 31733174  T
Q  103 ctccgattttttacaaat-gaaagtgtc------gctccgaaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtca 195  Q
    |||||||||||||| ||| |||||||||      ||| | ||||||||| |||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  31733175 ctccgattttttacgaatggaaagtgtcaattctgcttc-aaaaatcgtactccaattttgacagcttcaccaaacttcaatttctccaattttgagtca 31733273  T
Q  196 ctttcacaaca 206  Q
    |||||||||||    
T  31733274 ctttcacaaca 31733284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 17849064 - 17848952
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  17849064 gatacaatgtttatatttatagtaaaagcatccctcataaattggaaccaaatcaggcccatataaatacgttttatttttattcttctgcgcgaaatcg 17848965  T
Q  101 tgctccgattttt 113  Q
    |||||||||||||    
T  17848964 tgctccgattttt 17848952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 17848392 - 17848268
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||| |||||| |||||  |||||||||||||||||| |   ||||||| ||||||    
T  17848392 gatacaaagcctatatttatagtaaaagaatccctcataaattggaacaaaatcaggccca--aaaatacgttttatttttctgactctgcgcaaaatcg 17848295  T
Q  101 tgctccgattttttacaaatgaaagtg 127  Q
    |||||||||||||||| ||||||||||    
T  17848294 tgctccgattttttacgaatgaaagtg 17848268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 28196573 - 28196475
Alignment:
Q  12 tatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgtgctccgattt 111  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| |||||  ||||||||||||||||||||   ||||||| ||||||| |||||||||    
T  28196573 tatatttatagtaaaagaatccctcataaattggaacaaaatcaggccca--aaaatacgttttatttttatgactctgcgcaaaatcgtactccgattt 28196476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 38414497 - 38414567
Alignment:
Q  136 aaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  38414497 aaaaatcgtactccaattttgacagcttcagcaaacttcaatttctccaattttgagtcactttcacaaca 38414567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 28196402 - 28196333
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaacac 207  Q
    ||||||| |||| ||||| ||||||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  28196402 aaatcgtactccgattttgacagcttcagcaaacttcaatttctccatttttgagtcactttcacaacac 28196333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 11578420 - 11578494
Alignment:
Q  9 gtctatatttatagtaaaagca-tccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttat 83  Q
    |||||||||||||||||||||| ||||||| |||||||||| |||||| |||| | ||||||||||||||||||||    
T  11578420 gtctatatttatagtaaaagcaatccctcaaaaattggaac-aaatcaggcccctaaaaatacgttttatttttat 11578494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 17848879 - 17848812
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaac 205  Q
    |||||| ||| | ||||| |||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  17848879 aaatcgggcttcgattttgacagtttcagcaaacttcaatttctccaattttgagtcactttcacaac 17848812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 38414348 - 38414446
Alignment:
Q  11 ctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgtgctccgatt 110  Q
    |||||||||||||||||| |||| |||||||||| ||| |||| | |||||  |||||| | |||||||||||  |||||||| ||||||| ||||||||    
T  38414348 ctatatttatagtaaaagaatccttcataaattgaaacaaaataaggccca--aaaatatgatttatttttatgattctgcgc-aaatcgtactccgatt 38414444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 17848222 - 17848155
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||| ||||| ||||| ||||||||| |||||| |||||| |||||||||||||||||||| |||||    
T  17848222 aaatcgggctccgattttgacagcttcagcaaact-caatttctccaattttgagtcactttcccaaca 17848155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35028526 - 35028479
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaac 48  Q
    |||||||||||||||||||||||||||| |||||| | ||||||||||    
T  35028526 gatacaatgtctatatttatagtaaaagtatccctaaaaaattggaac 35028479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20589608 - 20589560
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagc-atccctcataaattggaac 48  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||||||||    
T  20589608 gatacaaggtctatatttatagtaaaagcaatccctcaaaaattggaac 20589560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35107247 - 35107200
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaac 48  Q
    |||||||||||||||||||||||||||| |||||| | || |||||||    
T  35107247 gatacaatgtctatatttatagtaaaagtatcccttaaaatttggaac 35107200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 45156990 - 45156951
Alignment:
Q  9 gtctatatttatagtaaaagcatccctcataaattggaac 48  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  45156990 gtctatatttatagtaaaagcatccctcaaaatttggaac 45156951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 13828657 - 13828729
Alignment:
Q  10 tctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttat 83  Q
    ||||||||||||||||||| |||||| | ||||||||| ||||||   | ||| ||| ||||||||||||||||    
T  13828657 tctatatttatagtaaaagaatccctaaaaaattggaa-caaatctcacgcataaaagtacgttttatttttat 13828729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 37963236 - 37963304
Alignment:
Q  2 atacaatgtctatatttatagtaaaagcatccctcat-aaattggaaccaaatcatgcccatcaaaatac 70  Q
    |||||| |||||||||||||||||||| |||| |||| ||||||||| ||||||  |||||| |||||||    
T  37963236 atacaaagtctatatttatagtaaaagtatccatcataaaattggaa-caaatctggcccataaaaatac 37963304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17897550 - 17897586
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctca 37  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  17897550 gatacaaggtctatatttatagtaaaagtatccctca 17897586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 20146915 - 20146955
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaa 41  Q
    ||||||| |||||||||||||||||||  ||||||||||||    
T  20146915 gatacaaggtctatatttatagtaaaaatatccctcataaa 20146955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22163255 - 22163287
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  22163255 gatacaatgtctatatttatagtaaaagaatcc 22163287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 7e-74; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 50076982 - 50077193
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| ||||||    
T  50076982 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcaggcccataaaaatacattttatttttattcttctgcgcaaaatcg 50077081  T
Q  101 tgctccgattttttacaaatgaaagtgtc------gctccgaaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtc 194  Q
    |||||||||||||||| ||| |||||| |      ||||| |||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||    
T  50077082 tgctccgattttttacgaattaaagtgccaaatctgctccaaaaaatcgtgctccgattttgacagcttcaacaaacttcaatttctctaattttgagtc 50077181  T
Q  195 actttcacaaca 206  Q
    ||||||||||||    
T  50077182 actttcacaaca 50077193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 12302820 - 12303033
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagca-tccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatc 99  Q
    ||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| |||||||    
T  12302820 gatacaaggtctatatttatagtaaaagtaatccctcataaattggaaccaaatcaggcccataaaaatacattttatttttattcttctgcacgaaatc 12302919  T
Q  100 gtgctccgattttttacaaatgaaagtgt------cgctccgaaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagt 193  Q
    ||||||||||||||||||||||||| |||       ||||   |||||||||||||  |||| ||| ||| | ||||||||||||| ||||||||||| |    
T  12302920 gtgctccgattttttacaaatgaaaatgttaattctgctctagaaaatcgtgctccgcttttgacaactttagcaaacttcaatttctccaattttgaat 12303019  T
Q  194 cactttcacaacac 207  Q
    ||||||||||||||    
T  12303020 cactttcacaacac 12303033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 11457785 - 11457896
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  11457785 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcagacccataaaaatacgttttatttttattcttctgcgcgaaatcg 11457884  T
Q  101 tgctccgatttt 112  Q
    ||||||||||||    
T  11457885 tgctccgatttt 11457896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 50079132 - 50079242
Alignment:
Q  2 atacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgt 101  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||| ||||||||||||||||||||||||| ||||||||||||    
T  50079132 atacaatgtctatatttatagtaaaagcatccctcataaatttgaaccaaatcagatccataaaaatacgttttatttttattcttcagcgcgaaatcgt 50079231  T
Q  102 gctccgatttt 112  Q
    |||||||||||    
T  50079232 gctccgatttt 50079242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 50307971 - 50308077
Alignment:
Q  97 atcgtgctccgattttttacaaatgaaagtgtcgctccgaaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcac 196  Q
    |||||||| ||||||||||| ||||||  |   ||||| |||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  50307971 atcgtgcttcgattttttacgaatgaa--ttatgctccaaaaaatcgtgctccaattttgacagcttcagcaaac-tcaatttctccaattttgagtcac 50308067  T
Q  197 tttcacaaca 206  Q
    ||||||||||    
T  50308068 tttcacaaca 50308077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 40133726 - 40133658
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||||||||| ||||| ||||||||| ||||||||||||| || |||||||||||||||||||||||    
T  40133726 aaatcgtgctccgattttgacagcttcagcaaacttcaatttctctaattttgagtcactttcacaaca 40133658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 40133906 - 40133799
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||| |||||| ||    ||||| | |||||||||||||  || ||||| ||||||    
T  40133906 gatacaaagcctatatttatagtaaaagaatccctcataaattggaacaaaatcaggc----caaaaaatgttttatttttatgattatgcgcaaaatcg 40133811  T
Q  101 tgctccgatttt 112  Q
    | ||| ||||||    
T  40133810 tactctgatttt 40133799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 17318680 - 17318612
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||||||||| || || | ||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  17318680 aaatcgtgctccgatattgatagcttcagcaaacttcaatttctccgattttgagtcactttcacaaca 17318612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 49495509 - 49495591
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcat-aaattggaaccaaatcatgcccatcaaaatacgttttatttttat 83  Q
    ||||||| |||||||||||||||||||| ||||||||| ||||| ||| ||||||  || ||| ||||||||||||||||||||    
T  49495509 gatacaaagtctatatttatagtaaaagtatccctcataaaattcgaa-caaatctggctcataaaaatacgttttatttttat 49495591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 17318854 - 17318784
Alignment:
Q  11 ctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttat 83  Q
    |||||||||||||||||  ||||||||||||||||||| |||||| | |  | ||||||||||||||||||||    
T  17318854 ctatatttatagtaaaaaaatccctcataaattggaacaaaatcaggtc--taaaaatacgttttatttttat 17318784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 50079315 - 50079383
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||| | ||| ||||| ||||||||| ||||||||||||| | |||||| |||||||||||||||||    
T  50079315 aaatcgggttccgattttgacagcttcagcaaacttcaatttcttcaatttggagtcactttcacaaca 50079383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27916468 - 27916421
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaac 48  Q
    |||||||||||||||||||||||||||| |||||||  ||||||||||    
T  27916468 gatacaatgtctatatttatagtaaaagtatccctccaaaattggaac 27916421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 26613550 - 26613631
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttat 83  Q
    ||||||| |||||||||||||| ||||| |||||||| ||||||||| ||||||   | ||| |||||| |||||||||||||    
T  26613550 gatacaaggtctatatttatagcaaaagaatccctcaaaaattggaa-caaatctcacgcataaaaatatgttttatttttat 26613631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 26979835 - 26979906
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttt 74  Q
    ||||||| |||| |||||||| ||||||||||||| | |||||||||| |||||| |||||  |||||||||||    
T  26979835 gatacaaggtctttatttataataaaagcatccctaaaaaattggaacaaaatcaagccca--aaaatacgttt 26979906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8347580 - 8347661
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaa-ttggaaccaaatcatgcccatcaaaatacgttttatttttat 83  Q
    ||||||| |||||| ||||||||||||| | |||||||||| ||||||| |||||   ||||| ||||||||||||||||||||    
T  8347580 gatacaaggtctat-tttatagtaaaagtacccctcataaaattggaac-aaatctgacccataaaaatacgttttatttttat 8347661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 14184109 - 14184147
Alignment:
Q  168 aaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  14184109 aaacttcaatttctccaattttaagtcactttcacaaca 14184147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 16430861 - 16430823
Alignment:
Q  168 aaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  16430861 aaactccaatttattcaattttgagtcactttcacaaca 16430823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42922205 - 42922163
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaatt 43  Q
    |||||||  ||||||||||||||||||| ||||||||||||||    
T  42922205 gatacaaaatctatatttatagtaaaagtatccctcataaatt 42922163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 50307868 - 50307965
Alignment:
Q  12 tatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgtgctccgattt 111  Q
    ||||||||||||||||| ||||||| ||||||| ||| |||||| |||   ||||| | ||||||||||| |   ||||||| ||||||| ||| |||||    
T  50307868 tatatttatagtaaaagaatccctcgtaaattgtaacaaaatcaggcc---caaaaaaagttttatttttctgaatctgcgcaaaatcgtactctgattt 50307964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 17352832 - 17352796
Alignment:
Q  171 cttcaatttatccaattttgagtcactttcacaacac 207  Q
    ||||||||| | |||||||||||||||||||||||||    
T  17352832 cttcaatttcttcaattttgagtcactttcacaacac 17352796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43104130 - 43104094
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctca 37  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  43104130 gatacaaggtctatatttatagtaaaagtatccctca 43104094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 50248882 - 50248914
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  50248882 gatacaatgtctatatttatagtaaaagaatcc 50248914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 6 - 206
Target Start/End: Original strand, 4296249 - 4296455
Alignment:
Q  6 aatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgtgctc 105  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  4296249 aatgtctatatttatagtaaaagcatccctcataaattggatccaaatcaggcccataaaaatacgttttatttttattcttctgcgcaaaatcgtgctc 4296348  T
Q  106 cgattttttacaaatgaaagtgtc------gctccgaaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcacttt 199  Q
    ||||||||| | |||||||||| |      ||||| |||||||||||||| ||||| ||||||||| ||| ||||||||| |||||||||||||||||||    
T  4296349 cgatttttttcgaatgaaagtggcaattctgctccaaaaaatcgtgctccgattttgacagcttcagcaagcttcaatttctccaattttgagtcacttt 4296448  T
Q  200 cacaaca 206  Q
    |||||||    
T  4296449 cacaaca 4296455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 9680795 - 9680684
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||| |   ||||||| ||||||    
T  9680795 gatacaaggtctatatttatagtaaaagcatccctcataaattggaaccaaatcaggcccataaaaatacattttatttttctgaatctgcgcaaaatcg 9680696  T
Q  101 tgctccgatttt 112  Q
    | ||||||||||    
T  9680695 tactccgatttt 9680684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 11355239 - 11355115
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||| |||||| |||||  |||||||||||||||||| |   ||||||| ||||||    
T  11355239 gatacaaagcctatatttatagtaaaagaatccctcataaattggaacaaaatcaggccca--aaaatacgttttatttttctgactctgcgcaaaatcg 11355142  T
Q  101 tgctccgattttttacaaatgaaagtg 127  Q
    |||||||||||||||| ||||||||||    
T  11355141 tgctccgattttttacgaatgaaagtg 11355115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 20137429 - 20137526
Alignment:
Q  13 atatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgtgctccgatttt 112  Q
    |||||||||||||||| ||||||||||||||||||| |||||| |||||  ||||||||||||||||||||  || ||||| ||||||| ||||||||||    
T  20137429 atatttatagtaaaagaatccctcataaattggaacaaaatcaggccca--aaaatacgttttatttttatgattttgcgcaaaatcgtactccgatttt 20137526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 20137600 - 20137668
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  20137600 aaatcgtgctccgattataacagcttcagcaaacttcaatttctccaattttgagtcactttcacaaca 20137668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 97 - 206
Target Start/End: Complemental strand, 42223001 - 42222888
Alignment:
Q  97 atcgtgctccgattttttacaaatgaaagtgtc------gctccgaaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttg 190  Q
    ||||||||| |||||||||| ||||||||||||      ||||| |||||||||||||| ||||| ||||||||| |||||| |||||| |||||||||     
T  42223001 atcgtgctctgattttttacgaatgaaagtgtcaattctgctcc-aaaaatcgtgctccgattttgacagcttcagcaaact-caatttctccaatttta 42222904  T
Q  191 agtcactttcacaaca 206  Q
    ||||||||||||||||    
T  42222903 agtcactttcacaaca 42222888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 42223137 - 42223028
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||| | |||||||||||||||||| | ||||||||||||||||| |||||| |||||  |||||||||||||||||| |   ||| ||| ||||||    
T  42223137 gatacaaagcctatatttatagtaaaagaaaccctcataaattggaacaaaatcaggccca--aaaatacgttttatttttctgaatctacgcaaaatcg 42223040  T
Q  101 tgctccgatttt 112  Q
    | ||||||||||    
T  42223039 tactccgatttt 42223028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9679035 - 9678960
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgtttta 76  Q
    |||||||  |||||||||||||||||| |||||||||||||||| ||||||||||  ||||| |||||||||||||    
T  9679035 gatacaagatctatatttatagtaaaaacatccctcataaattgaaaccaaatcaaacccataaaaatacgtttta 9678960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 24817865 - 24817909
Alignment:
Q  162 ttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  24817865 ttcaacaaacttcaatttctccaattttgagtcactttcacaaca 24817909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 9678932 - 9678863
Alignment:
Q  137 aaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaacac 207  Q
    ||||| ||||||| ||||| |||||||||||| |||| ||||| ||||||||||||||| |||||||||||    
T  9678932 aaaattgtgctccgattttgacagcttcaacatactt-aatttctccaattttgagtcattttcacaacac 9678863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 9680601 - 9680542
Alignment:
Q  146 ctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||| ||||| ||||||||| ||||||| ||||| ||||||||||||||||||||||||||    
T  9680601 ctccgattttgacagcttcagcaaactt-aatttctccaattttgagtcactttcacaaca 9680542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 11355077 - 11355010
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||| ||||| ||||| ||||||||| |||||| |||||| | ||||||||||||||||||||||||    
T  11355077 aaatcgggctccgattttgacagcttcagcaaact-caatttcttcaattttgagtcactttcacaaca 11355010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7188524 - 7188484
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaa 41  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  7188524 gatacaaagtctatatttatagtaaaagtatccctcataaa 7188484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 6048652 - 6048617
Alignment:
Q  2 atacaatgtctatatttatagtaaaagcatccctca 37  Q
    |||||| |||||||||||||||||||||||||||||    
T  6048652 atacaaggtctatatttatagtaaaagcatccctca 6048617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 6067511 - 6067547
Alignment:
Q  12 tatatttatagtaaaagcatccctcataaattggaac 48  Q
    |||||||||||||||||||||||| | ||||||||||    
T  6067511 tatatttatagtaaaagcatccctaaaaaattggaac 6067547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 20091857 - 20091889
Alignment:
Q  9 gtctatatttatagtaaaagcatccctcataaa 41  Q
    |||||||||||||||||||| ||||||||||||    
T  20091857 gtctatatttatagtaaaagtatccctcataaa 20091889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22828941 - 22828981
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaa 41  Q
    ||||||| | |||||||||||||||||| ||||||||||||    
T  22828941 gatacaaagcctatatttatagtaaaagtatccctcataaa 22828981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 24815587 - 24815623
Alignment:
Q  170 acttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  24815587 acttcaatttctccaattttgagtgactttcacaaca 24815623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44724560 - 44724528
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  44724560 gatacaatgtctatatttatagtaaaagaatcc 44724528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 880758 - 880869
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  880758 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcaggcccataaaaatacgttttatttttattcttctgcgcgaaatcg 880857  T
Q  101 tgctccgatttt 112  Q
    ||| ||||||||    
T  880858 tgcgccgatttt 880869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 6231400 - 6231289
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  6231400 gatacaatgtctatatttatagtaaaatcatccctcataaattggaaccaaatcaggcccataaaaatacgttttatttttattcttctgcgcgaaatcg 6231301  T
Q  101 tgctccgatttt 112  Q
    |||||| |||||    
T  6231300 tgctccaatttt 6231289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 53591145 - 53591034
Alignment:
Q  2 atacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgt 101  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |    
T  53591145 atacaatgtctatatttatagtaaaagcattcctcataaatcggaaccaaatcaggcccataaaaatacgttttatttttattcttctgcgcgaaatcat 53591046  T
Q  102 gctccgattttt 113  Q
    ||||||||||||    
T  53591045 gctccgattttt 53591034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 3306750 - 3306639
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||    
T  3306750 gatacaatgtctatatttatagtaaaaacatctctcataaattggaaccaaatcaggcccataaaactatgttttatttttattcttctgcgcgaaatcg 3306651  T
Q  101 tgctccgatttt 112  Q
    ||||||||||||    
T  3306650 tgctccgatttt 3306639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 3314635 - 3314525
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||||||| |||||||    
T  3314635 gatacaatatctatatttatagtaaaagcatccctcataaattggacccaaatcaggcccat-aaaataccttttatttttattcttctgcgtgaaatcg 3314537  T
Q  101 tgctccgatttt 112  Q
    ||||||||||||    
T  3314536 tgctccgatttt 3314525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 47149206 - 47149313
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagca-tccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatc 99  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  47149206 gatacaaggtctatatttatagtaaaagcaatccctcataaattggaaccaaatcaagcccataaaaatacgttttatttttattcttctgcgcgaaatc 47149305  T
Q  100 gtgctccg 107  Q
    || |||||    
T  47149306 gtactccg 47149313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 890077 - 890189
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||| ||||||    
T  890077 gatacaatatctatatttatagtaaaagcatccctcataaattggaaccaaatcaggcccataaaaatacattttgtttttattcttctgcgcaaaatcg 890176  T
Q  101 tgctccgattttt 113  Q
    ||||  |||||||    
T  890177 tgctatgattttt 890189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 51675061 - 51675172
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||  || || |||||||||||||||||||||||||| || |||||||    
T  51675061 gatacaacgtctatatttatagtaaaaacatccctcataaattggaaccaaatcagacctataaaaatacgttttatttttattcttctacgtgaaatcg 51675160  T
Q  101 tgctccgatttt 112  Q
    ||||| ||||||    
T  51675161 tgctctgatttt 51675172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 31151298 - 31151189
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||| |||| | |||||| |||||  ||||||||||||| |||||||||||||| |    
T  31151298 gatacaaagtctatatttatagtaaaagcatccctcataaattgtaacaaaataaggcccataaaaat--gttttatttttatgcttctgcgcgaaattg 31151201  T
Q  101 tgctccgatttt 112  Q
    |||||| |||||    
T  31151200 tgctccaatttt 31151189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 47149341 - 47149457
Alignment:
Q  97 atcgtgctccgatttttt-acaaatgaaagtgtc------gctccgaaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaatttt 189  Q
    |||||||||||||||||| || ||||||||||||      ||||| |||||||||||||| ||||| ||||||||| ||||||||||||| |||||||||    
T  47149341 atcgtgctccgatttttttacgaatgaaagtgtcaattctgctccaaaaaatcgtgctccgattttgacagcttcatcaaacttcaatttctccaatttt 47149440  T
Q  190 gagtcactttcacaaca 206  Q
    |||||||||||||||||    
T  47149441 gagtcactttcacaaca 47149457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 3306587 - 3306518
Alignment:
Q  137 aaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||||||||||| ||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  3306587 aaaatcgtgctccgattttgacagctttagcaaacttcaatttctccaattttgagtcactttcacaaca 3306518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 3314473 - 3314404
Alignment:
Q  137 aaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  3314473 aaaatcgtgctcctattttgacagcttcaacaaacttcaatttcttcaattttgaatcactttcacaaca 3314404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 6231232 - 6231169
Alignment:
Q  143 gtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  6231232 gtgctccgattttgacagcttcagcaaacttcaatttctccaattttgagtcactttcacaaca 6231169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 54691879 - 54692000
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatc- 99  Q
    ||||||| | |||||||||||||||||| |||| |||||||||||||| |||| | |||||  |||||| |||||||||||||   ||||||| |||||     
T  54691879 gatacaaagcctatatttatagtaaaagaatccttcataaattggaacaaaattaggccca-aaaaatatgttttatttttatgactctgcgcaaaatcg 54691977  T
Q  100 -gtgctccgattttttacaaatg 121  Q
     ||||||||||||||||| ||||    
T  54691978 tgtgctccgattttttacgaatg 54692000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 890238 - 890308
Alignment:
Q  136 aaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||| ||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  890238 aaaaattgtggtccgattttgacagcttcaacaaacttcaatttctccaattttgagtcactttcataaca 890308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 51675224 - 51675290
Alignment:
Q  137 aaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcaca 203  Q
    ||||||||||||| ||||| |||||||||  |||| ||||||| |||||||||||||||||||||||    
T  51675224 aaaatcgtgctccgattttgacagcttcagaaaacatcaatttctccaattttgagtcactttcaca 51675290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 53590981 - 53590911
Alignment:
Q  136 aaaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||||||| |||| ||||| ||||||||| ||||||||||||| | ||||||||||| | ||||||||||    
T  53590981 aaaaatcgtactccgattttgacagcttcagcaaacttcaatttcttcaattttgagttattttcacaaca 53590911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 28761742 - 28761787
Alignment:
Q  9 gtctatatttatagtaaaagcatccctcataaattggaaccaaatc 54  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||    
T  28761742 gtctatatttatagtaaaagtatccctcataaattggaacaaaatc 28761787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25635371 - 25635331
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaa 41  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  25635371 gatacaaagtctatatttatagtaaaagcatccctcataaa 25635331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 54692046 - 54692111
Alignment:
Q  141 tcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||||| | ||||| ||| || || ||||||||||||| ||||||||| ||||||||||||||||    
T  54692046 tcgtgcttcgattttgacaactccagcaaacttcaatttctccaattttaagtcactttcacaaca 54692111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 1620710 - 1620781
Alignment:
Q  12 tatatttatagtaaaagcatccctcat-aaattggaaccaaatcatgcccatcaaaatacgttttatttttat 83  Q
    ||||||||||||||||| ||||||||| ||||||||| ||||||  |||||| ||||||| || |||||||||    
T  1620710 tatatttatagtaaaagtatccctcataaaattggaa-caaatctagcccataaaaatacattatatttttat 1620781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 23633411 - 23633371
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaa 41  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  23633411 gatacaaagtctatatttatagtaaaagtatccctcataaa 23633371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 53597192 - 53597152
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaa 41  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  53597192 gatacaaggtctatatttatagtaaaagtatccctcataaa 53597152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 880950 - 881004
Alignment:
Q  146 ctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttca 201  Q
    |||| ||||| |||||||||||||||||||| || ||| |||||||||||||||||    
T  880950 ctccgattttgacagcttcaacaaacttcaacttctcc-attttgagtcactttca 881004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26762916 - 26762869
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaac 48  Q
    ||||||| || |||||||||||||||||||||||| | ||||||||||    
T  26762916 gatacaaggtttatatttatagtaaaagcatccctaaaaaattggaac 26762869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41849093 - 41849051
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaatt 43  Q
    |||||||||||||||||||||||||||| ||  ||||||||||    
T  41849093 gatacaatgtctatatttatagtaaaagtataactcataaatt 41849051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 1618966 - 1619046
Alignment:
Q  3 tacaatgtctatatttatagtaaaagcatccctcat-aaattggaaccaaatcatgcccatcaaaatacgttttatttttat 83  Q
    ||||| ||||||||||||||| |||| ||||||||| ||||||||| ||||||  |||||| |||||| ||| || ||||||    
T  1618966 tacaaggtctatatttatagtcaaagtatccctcataaaattggaa-caaatctagcccataaaaatatgttatacttttat 1619046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 23636764 - 23636727
Alignment:
Q  169 aacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  23636764 aactccaatttctccaattttgagtcactttcacaaca 23636727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 13419819 - 13419787
Alignment:
Q  9 gtctatatttatagtaaaagcatccctcataaa 41  Q
    |||||||||||||||||||| ||||||||||||    
T  13419819 gtctatatttatagtaaaagtatccctcataaa 13419787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 28180975 - 28180943
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  28180975 gatacaatgtctatatttatagtaaaagaatcc 28180943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 47701901 - 47701933
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  47701901 gatacaatgtctatatttatagtaaaagaatcc 47701933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 53468761 - 53468793
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  53468761 gatacaatgtctatatttatagtaaaagaatcc 53468793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 1189922 - 1190049
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagca-tccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatc 99  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | |||||    
T  1189922 gatacaaggtctatatttatagtaaaagcaatccctcataaattggaaccaaatcaggcccataaaaatacgttttatttttattcttctgcccaaaatc 1190021  T
Q  100 gtgctccgattttttacaaatgaaagtg 127  Q
    ||||||||||||||||| ||||||||||    
T  1190022 gtgctccgattttttacgaatgaaagtg 1190049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 25904074 - 25903963
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||    
T  25904074 gatacaatgtctatatttatagtaaaagcatccttcataaattgaaaccaaattaggcccataaaaatacgttttatttttattcttctgcgcgaaatcg 25903975  T
Q  101 tgctccgatttt 112  Q
    ||||||||||||    
T  25903974 tgctccgatttt 25903963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 31472922 - 31473026
Alignment:
Q  2 atacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgt 101  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||  |||||||||||||||||||||||||||||    
T  31472922 atacaatgtccatatttatagtaaaagcatccctcataaattggaaccaaatcaggcccataaaaatac--tttatttttattcttctgcgcgaaatcgt 31473019  T
Q  102 gctccga 108  Q
    |||||||    
T  31473020 gctccga 31473026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 36208551 - 36208440
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||| |||||| |||||| |||||| ||||||||||||||||| |||||||||||     
T  36208551 gatacaaggtctatatttatagtaaaagcatccctcgcaaattggaacaaaatcaggcccataaaaatatgttttatttttattcttttgcgcgaaatca 36208452  T
Q  101 tgctccgatttt 112  Q
    ||||||||||||    
T  36208451 tgctccgatttt 36208440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 9020193 - 9020025
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||| || | |||||||||||||| |||| ||||||||||||||| ||||||  ||||| |||||| |||||||||||||| |||||||| ||||||    
T  9020193 gatacaaggtatgtatttatagtaaaaacatctctcataaattggaacaaaatcagacccataaaaatatgttttatttttattgttctgcgcaaaatcg 9020094  T
Q  101 tgctccgattttttacaaatg-aaagtgtc------gctccgaaaaatcgtgctccaattttaacagctt 163  Q
    | ||||||||||||||||||| ||||||||      ||||| ||||||||| ||||||||||||||||||    
T  9020093 tactccgattttttacaaatgaaaagtgtcaattctgctcc-aaaaatcgtactccaattttaacagctt 9020025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 16092512 - 16092744
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||| |||||||||| |||||||   |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||   ||||||| ||||||    
T  16092512 gatacaaagtctatatttctagtaaagcaatccctcataaattggaaccaaatcaggcccataaaactacgttttatttttatgactctgcgccaaatcg 16092611  T
Q  101 t---------------------gctccgattttttacaaatgaaagtgtc------gctccgaaaaatcgtgctccaattttaacagcttcaacaaactt 173  Q
    |                     ||||||||||||||| |||||||||| |      ||| |||||||||||||||| ||||| ||||||||| |||||||    
T  16092612 tactccgattttgccagatcgtgctccgattttttacgaatgaaagtgccaattctgcttcgaaaaatcgtgctccgattttgacagcttcagcaaactt 16092711  T
Q  174 caatttatccaattttgagtcactttcacaaca 206  Q
    |||||| ||||||||||||||| ||||||||||    
T  16092712 caatttctccaattttgagtcagtttcacaaca 16092744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 1190086 - 1190155
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaacac 207  Q
    |||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  1190086 aaatcgtgctccaattttgacagcttcagcaaacttcaatttctccaattttgagtcactttcacaacac 1190155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 29748312 - 29748215
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatc 99  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||| ||||||    |||| |||||||||||||||||||| || ||| ||||||||    
T  29748312 gatacaaggtctatatttatagtaaaagcatccctcaaaatttggaa-caaatccaaaccataaaaatacgttttatttttatactgctgagcgaaatc 29748215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 36208367 - 36208298
Alignment:
Q  137 aaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||  |||||||| ||||||||||||||||    
T  36208367 aaaatcgtgctccgattttgacagcttcagcaaacttcaatttcaccaattttaagtcactttcacaaca 36208298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 31473082 - 31473150
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||||||||| ||||| ||||||||| ||||||||||||| ||||||||| | ||||||||||||||    
T  31473082 aaatcgtgctccgattttgacagcttcagcaaacttcaatttctccaattttaaatcactttcacaaca 31473150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42770745 - 42770672
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaa-ttggaaccaaatcatgcccatcaaaatacgttt 74  Q
    ||||||| || ||||||||||||||||| |||||||||||| ||||||| |||||  |||||| |||||||||||    
T  42770745 gatacaaagtttatatttatagtaaaagtatccctcataaaattggaac-aaatctggcccataaaaatacgttt 42770672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 25903889 - 25903825
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcaca 203  Q
    |||||| ||||||||||| | ||||||  |||||| |||||| ||||||||||| |||||||||||    
T  25903889 aaatcgggctccaattttgatagcttcggcaaact-caatttctccaattttgaatcactttcaca 25903825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2144900 - 2144936
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctca 37  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  2144900 gatacaaggtctatatttatagtaaaagtatccctca 2144936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2723938 - 2723906
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  2723938 gatacaatgtctatatttatagtaaaagaatcc 2723906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17072854 - 17072822
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  17072854 gatacaatgtctatatttatagtaaaagaatcc 17072822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 3390385 - 3390274
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |    
T  3390385 gatacaatgtctatatttatagtaaaagtatctctcataaattggaaccaaatcaggcccataaaaatacgttttatatttattcttctgcgcgaaattg 3390286  T
Q  101 tgctccgatttt 112  Q
    ||||||||||||    
T  3390285 tgctccgatttt 3390274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 3234046 - 3234242
Alignment:
Q  9 gtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgtgctccga 108  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||| |||||  |||||||||||  ||||| |   ||||| | ||||||||||||||    
T  3234046 gtctatatttatagtaaaagcatccttcataaattggaacaaaatcaggccca--aaaatacgtttagtttttctgactctgcacaaaatcgtgctccga 3234143  T
Q  109 ttttttacaaatgaaagtgtcgctccga------aaaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcac 202  Q
    |||||||| ||||||||||||  | | |      |||||||  |||| ||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  3234144 ttttttacgaatgaaagtgtcaattctacaacataaaatcggactccgattttgacagcttcagcaaac-tcaatttctccaattttgagtcactttcac 3234242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 3396289 - 3396201
Alignment:
Q  39 aaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgtgctccgattttttacaaatgaaagtg 127  Q
    ||||| |||||||||||   |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  3396289 aaattagaaccaaatcagatccataaaaatacgttttatttttattcttctacgcgaaatcgtgctccgattttttacgaatgaaagtg 3396201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15346397 - 15346344
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatc 54  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  15346397 gatacaatgtctatatttatagtaaaagtatccctcataaattggaacaaaatc 15346344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 32447624 - 32447734
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||| | |||||||||||||||||| |||| || ||||||| ||| |||||| |||||  ||||||||||||||||||||   ||||||| ||||||    
T  32447624 gatacaaagcctatatttatagtaaaagaatccatcgtaaattgaaacaaaatcaggccca--aaaatacgttttatttttatgactctgcgcaaaatcg 32447721  T
Q  101 tgctccgattttt 113  Q
    | |||| ||||||    
T  32447722 tactccaattttt 32447734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 3396163 - 3396095
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    |||||| ||| | ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  3396163 aaatcgggcttcgattttgacagcttcagcaaacttcaatttctccaattttgagtcactttcacaaca 3396095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15367042 - 15366990
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaat 53  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  15367042 gatacaatgtctatatttatagtaaaagtatccctcataaattggaacaaaat 15366990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 26945154 - 26945045
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||| || |||||||||||||||||||| |||||||||||||||| |||||| |||||| ||| ||  |||||  ||||| ||||||||| |||| |    
T  26945154 gatacaaggtttatatttatagtaaaagcattcctcataaattggaacaaaatcaggcccataaaattatatttta--tttatgcttctgcgcaaaattg 26945057  T
Q  101 tgctccgatttt 112  Q
    | || |||||||    
T  26945056 tacttcgatttt 26945045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 32447807 - 32447875
Alignment:
Q  138 aaatcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||||| ||||  |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  32447807 aaatcgtactccttttttgacagcttcaacaaacttaaatttctccaattttgagtcactttcacaaca 32447875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 19696446 - 19696347
Alignment:
Q  2 atacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcgt 101  Q
    |||||| |||||||||||||||||||| |||| ||| ||||||||| ||||||   | ||| |||||||||||||||||||| | || |||| |||||||    
T  19696446 atacaaggtctatatttatagtaaaagaatccttcaaaaattggaa-caaatctcacgcataaaaatacgttttatttttatgcatcagcgcaaaatcgt 19696348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 3390193 - 3390132
Alignment:
Q  145 gctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||| ||||| ||||||||   |||||||||||| ||||||||||||||||||||||||||    
T  3390193 gctccgattttgacagcttctgtaaacttcaatttctccaattttgagtcactttcacaaca 3390132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28038013 - 28038053
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaa 41  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  28038013 gatacaatgtctatatttatagtaaaagtatccctcataaa 28038053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 15719478 - 15719423
Alignment:
Q  151 attttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaaca 206  Q
    ||||| |||| |||| ||||||| ||||| ||||||||||||||||||||||||||    
T  15719478 attttgacagattcagcaaactttaatttctccaattttgagtcactttcacaaca 15719423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 15719652 - 15719571
Alignment:
Q  2 atacaatgtctatatttatagtaaaagcatccctcat-aaattggaaccaaatcatgcccatcaaaatacgttttatttttat 83  Q
    ||||||||| ||||||||||||||||| | ||||||| ||||||||| |||||   ||| || ||||||||||||||||||||    
T  15719652 atacaatgtatatatttatagtaaaagtaaccctcataaaattggaa-caaatatggcctataaaaatacgttttatttttat 15719571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3630172 - 3630204
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  3630172 gatacaatgtctatatttatagtaaaagaatcc 3630204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 13057200 - 13057168
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  13057200 gatacaatgtctatatttatagtaaaagaatcc 13057168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 79829 - 79761
Alignment:
Q  11 ctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttattttt 81  Q
    |||||||||||||||||| ||||||||||||||||||| |||||| |||||  ||||||||||||||||||    
T  79829 ctatatttatagtaaaagaatccctcataaattggaacaaaatcaggccca--aaaatacgttttattttt 79761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 79726 - 79660
Alignment:
Q  140 atcgtgctccaattttaacagcttcaacaaacttcaatttatccaattttgagtcactttcacaacac 207  Q
    |||||||||| ||||| ||||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  79726 atcgtgctccgattttgacagcttcagcaaact-caatttctccaattttgagtcactttcacaacac 79660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 85211 - 85088
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaattggaaccaaatcatgcccatcaaaatacgttttatttttattcttctgcgcgaaatcg 100  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||| |||||| | | |  |||||| |||||||||||||  || |  || | ||||    
T  85211 gatacaaagcctatatttatagtaaaagaatccctcataaattggaacaaaatca-gacaa--aaaatatgttttatttttatgatttt--gctagatcg 85117  T
Q  101 tgctccgattttttacaaatgaaagtgtc 129  Q
    || ||||||||||||| ||||||||||||    
T  85116 tgttccgattttttacgaatgaaagtgtc 85088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16126 - 16168
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatccctcataaatt 43  Q
    |||||||  ||||||||||||||||||| ||||||||||||||    
T  16126 gatacaaaatctatatttatagtaaaagtatccctcataaatt 16168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35620 - 35588
Alignment:
Q  1 gatacaatgtctatatttatagtaaaagcatcc 33  Q
    |||||||||||||||||||||||||||| ||||    
T  35620 gatacaatgtctatatttatagtaaaagaatcc 35588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University