View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12597_high_29 (Length: 259)

Name: NF12597_high_29
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12597_high_29
NF12597_high_29
[»] chr5 (8 HSPs)
chr5 (16-241)||(30049105-30049331)
chr5 (39-128)||(16795978-16796067)
chr5 (29-128)||(37679335-37679434)
chr5 (39-128)||(7102133-7102222)
chr5 (39-128)||(12020598-12020687)
chr5 (39-128)||(30697105-30697194)
chr5 (39-128)||(40370006-40370095)
chr5 (40-128)||(10276334-10276422)
[»] chr8 (7 HSPs)
chr8 (36-236)||(10682725-10682925)
chr8 (39-128)||(200443-200532)
chr8 (39-128)||(315280-315369)
chr8 (39-128)||(30408562-30408651)
chr8 (39-128)||(43810242-43810331)
chr8 (39-139)||(1288634-1288734)
chr8 (39-139)||(41947124-41947224)
[»] chr1 (3 HSPs)
chr1 (35-133)||(30642912-30643010)
chr1 (39-128)||(26313322-26313411)
chr1 (39-128)||(39795704-39795793)
[»] chr7 (2 HSPs)
chr7 (39-128)||(7942842-7942931)
chr7 (39-128)||(27758706-27758795)
[»] chr6 (5 HSPs)
chr6 (39-128)||(8318263-8318352)
chr6 (39-139)||(31927383-31927483)
chr6 (39-136)||(27570483-27570580)
chr6 (42-122)||(15500950-15501030)
chr6 (39-128)||(17161404-17161493)
[»] chr4 (4 HSPs)
chr4 (39-128)||(44148867-44148956)
chr4 (39-139)||(43681940-43682040)
chr4 (39-139)||(31356471-31356571)
chr4 (39-139)||(27187945-27188045)
[»] chr3 (5 HSPs)
chr3 (46-139)||(43551608-43551701)
chr3 (39-128)||(54170103-54170192)
chr3 (39-128)||(21848932-21849021)
chr3 (45-207)||(22929986-22930148)
chr3 (39-139)||(9699388-9699488)
[»] chr2 (3 HSPs)
chr2 (39-128)||(8052701-8052790)
chr2 (39-128)||(36672360-36672449)
chr2 (39-139)||(35953180-35953280)
[»] scaffold0044 (1 HSPs)
scaffold0044 (39-128)||(47624-47713)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 30049105 - 30049331
Alignment:
Q  16 atgaaaactactgatctgatactgtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttga 115  Q
    ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30049105 atgaaaactactgatctgatactataaaaaatgaagatagttagttatgggactacagatttggtcatttaaattttagaagtcttaatcagttagttga 30049204  T
Q  116 caaagaattgattttaggagtaccaaagttgaatataccagagaaagtatgtgata-ttttcttgatagacaagcaacctaaaaatgcattcagtgcaaa 214  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||||||| ||||||||||||||||||    
T  30049205 cgaagaattgattttaggagtaccaaagttgaatataccagagaaaatatgtgatattttttttgataaacaagcaacctagaaatgcattcagtgcaaa 30049304  T
Q  215 tacaactcataggttaactgaggtgtt 241  Q
    |||||||||||| ||||| ||||||||    
T  30049305 tacaactcatagattaacagaggtgtt 30049331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 16795978 - 16796067
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  16795978 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 16796067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 37679335 - 37679434
Alignment:
Q  29 atctgatactgtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    ||||||||  |||||| |||||||||| ||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  37679335 atctgatatggtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 37679434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 7102222 - 7102133
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| | || |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  7102222 gtaaaagatgaagatagttggttatggcaatatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 7102133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 12020598 - 12020687
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||| ||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  12020598 gtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 12020687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 30697105 - 30697194
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||| ||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  30697105 gtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 30697194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 40370095 - 40370006
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||| ||| ||||| |||| |||||||||||| | | ||||||| ||||||| || || ||||| |||||| |||||    
T  40370095 gtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaaccaattggttgataaagaaatgatt 40370006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 10276334 - 10276422
Alignment:
Q  40 taaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    ||||| ||||||||||  || ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||| | |||||| |||||    
T  10276334 taaaagatgaagatagccggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggtttataaagaaatgatt 10276422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 236
Target Start/End: Complemental strand, 10682925 - 10682725
Alignment:
Q  36 actgtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggag 135  Q
    |||||||  ||||||| ||||||| | ||| |||| |||||||| ||||||| ||||||| |||| | ||| || ||||| ||| |||||||   |||||    
T  10682925 actgtaagcaatgaagttagttggttctggtactatagatttggccatttaaattttagacgtctcactcaatttgttgataaataattgatccaaggag 10682826  T
Q  136 taccaaagttgaatataccagagaaagtatgtgatattttcttgatagacaagcaacctaaaaatgcattcagtgcaaatacaactcataggttaactga 235  Q
     |||||| |||||| ||||||||||||| || ||| ||| |||||||| | |||||| || ||||||||| ||| |||| ||| ||||||| | ||||||    
T  10682825 caccaaaattgaatgtaccagagaaagtttgggatgtttgcttgataggccagcaacttagaaatgcattaagttcaaacacagctcatagatcaactga 10682726  T
Q  236 g 236  Q
    |    
T  10682725 g 10682725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 200532 - 200443
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  200532 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 200443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 315369 - 315280
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  315369 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 315280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 30408651 - 30408562
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  30408651 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 30408562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 43810331 - 43810242
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  43810331 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 43810242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 1288634 - 1288734
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 138  Q
    |||||| |||||||||| ||| ||||  |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| ||||| |||||||||    
T  1288634 gtaaaagatgaagatagatggttatgacactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattctaggagtac 1288733  T
Q  139 c 139  Q
    |    
T  1288734 c 1288734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 41947124 - 41947224
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 138  Q
    |||||| |||||||||| ||| ||||| | || |||||||||||| | | ||||||| |||||||||| |||||||| |||||  ||||| | |||||||    
T  41947124 gtaaaagatgaagatagctggttatggcattatagatttggtcatctcaattttagaggtcttaatcaattagttgataaagatatgattctgggagtac 41947223  T
Q  139 c 139  Q
    |    
T  41947224 c 41947224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 30642912 - 30643010
Alignment:
Q  35 tactgtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttagg 133  Q
    |||||| || || |||||||| |||||||||  ||| || ||||||||  ||| ||||||||| |||||||| ||||||||||||||| ||||||||||    
T  30642912 tactgtgaataaagaagatagctggctatggacctataggtttggtcacctaaattttagaagccttaatcatttagttgacaaagaaatgattttagg 30643010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 26313322 - 26313411
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  26313322 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 26313411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 39795704 - 39795793
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  39795704 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 39795793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 7942931 - 7942842
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  7942931 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 7942842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 27758706 - 27758795
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  27758706 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 27758795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 8318352 - 8318263
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  8318352 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 8318263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 31927483 - 31927383
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 138  Q
    |||||| |||||||||||||| ||||  | || || ||||||||| | | ||||||| |||||||||| ||||||||||||||  ||||| | |||||||    
T  31927483 gtaaaagatgaagatagttggttatgacattataggtttggtcatctcaattttagaggtcttaatcaattagttgacaaagatatgattatgggagtac 31927384  T
Q  139 c 139  Q
    |    
T  31927383 c 31927383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 27570580 - 27570483
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagt 136  Q
    |||||| |||||| | ||||| ||||| |||| |||||||||||| | | ||||||| |||||||| | || ||||| |||||| ||||||| |||||    
T  27570580 gtaaaagatgaaggttgttggttatggcactatagatttggtcatctcaattttagaggtcttaataaattggttgataaagaaatgattttgggagt 27570483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 15501030 - 15500950
Alignment:
Q  42 aaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaa 122  Q
    |||||||||||||||| | ||||| |||| || ||||||||| | | ||||||| || ||||||| |||||||| ||||||    
T  15501030 aaaaatgaagatagtttgttatggcactataggtttggtcatcttaattttagaggttttaatcaattagttgataaagaa 15500950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 17161404 - 17161493
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||| | ||||||  | || |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  17161404 gtaaaagatgaagatagcttgctatgacattatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 17161493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 44148867 - 44148956
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  44148867 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 44148956  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 43682040 - 43681940
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 138  Q
    |||||| |||||||||| ||| ||||| |||| ||||||||||||   | ||||||| |||||||||| || ||||| |||||| ||||||| |||||||    
T  43682040 gtaaaagatgaagatagctggttatggcactatagatttggtcatcccaattttagaggtcttaatcaattggttgataaagaaatgattttgggagtac 43681941  T
Q  139 c 139  Q
    |    
T  43681940 c 43681940  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 31356471 - 31356571
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 138  Q
    |||||| || ||||||| ||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || | ||| |||||| ||||||| |||||||    
T  31356471 gtaaaagataaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggatgataaagaaatgattttgggagtac 31356570  T
Q  139 c 139  Q
    |    
T  31356571 c 31356571  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 27187945 - 27188045
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 138  Q
    |||||| |||||||||  | | ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| ||||| | |||||||    
T  27187945 gtaaaagatgaagataactagttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattctgggagtac 27188044  T
Q  139 c 139  Q
    |    
T  27188045 c 27188045  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 43551608 - 43551701
Alignment:
Q  46 atgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtacc 139  Q
    |||||||||| ||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| ||||| ||||||||||    
T  43551608 atgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattctaggagtacc 43551701  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 54170192 - 54170103
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  54170192 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 54170103  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 21848932 - 21849021
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||| ||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  21848932 gtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 21849021  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 22930148 - 22929986
Alignment:
Q  45 aatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtaccaaagt 144  Q
    ||||||||||| ||||||||| |||| |  ||||| ||| | | ||  | |||||||||||| ||||||||||||||  ||||||| | |||||| ||||    
T  22930148 aatgaagatagctggctatggcactatatgtttggccatcttaattacataagtcttaatcatttagttgacaaagagatgattttggtagtacctaagt 22930049  T
Q  145 tgaatataccagagaaagtatgtgatattttcttgatagacaagcaacctaaaaatgcattca 207  Q
    || |||||||  | ||| | | ||||| |   ||||||| ||||||||||| || ||||||||    
T  22930048 tggatatacctcataaattttatgatactaggttgataggcaagcaacctagaactgcattca 22929986  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 9699388 - 9699488
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 138  Q
    |||||| |||||||||  | | ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| ||||| | |||||||    
T  9699388 gtaaaagatgaagataactagttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattctgggagtac 9699487  T
Q  139 c 139  Q
    |    
T  9699488 c 9699488  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 8052701 - 8052790
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  8052701 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 8052790  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 36672360 - 36672449
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||||||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  36672360 gtaaaagatgaagatagttggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 36672449  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 35953280 - 35953180
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgattttaggagtac 138  Q
    |||||| ||||||||| || | ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| ||||| | |||||||    
T  35953280 gtaaaagatgaagatattttgttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgattctgggagtac 35953181  T
Q  139 c 139  Q
    |    
T  35953180 c 35953180  T

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Target: scaffold0044 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 47713 - 47624
Alignment:
Q  39 gtaaaaaatgaagatagttggctatgggactacagatttggtcatttaagttttagaagtcttaatcagttagttgacaaagaattgatt 128  Q
    |||||| |||||||||| ||| ||||| |||| |||||||||||| | | ||||||| |||||||||| || ||||| |||||| |||||    
T  47713 gtaaaagatgaagatagctggttatggcactatagatttggtcatctcaattttagaggtcttaatcaattggttgataaagaaatgatt 47624  T

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