View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_high_33 (Length: 242)
Name: NF12597_high_33
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 40489892 - 40489682
Alignment:
| Q |
18 |
agattcggtatattttcttattgaagtgtttattgtgagtgcaaagaatccaattttggtatattcttctatattgaacactgnnnnnnnnnnnnnnnac |
117 |
Q |
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| T |
40489892 |
agattcggtatattttcttattgaagtgtttattgtgagtgcaaagaatccaattttggtatattcttctatattgaacactgtttttattttt----ac |
40489797 |
T |
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| Q |
118 |
gtaactatcatctaaagtagtcttgaaccaaaggtgcatctccttcttccatttactttatattatttaaataaaaacggtagtcttatctcacgtggaa |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40489796 |
gtaactatcatctaaagtagtctggaaccaaaggtgcatctccttcttccatttactttatattatttaaataaaaacagtagtcttatctcacgtggaa |
40489697 |
T |
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| Q |
218 |
taaacgaggcctttg |
232 |
Q |
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||||||||||||||| |
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| T |
40489696 |
taaacgaggcctttg |
40489682 |
T |
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