View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12597_high_34 (Length: 240)
Name: NF12597_high_34
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_high_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 43 - 225
Target Start/End: Original strand, 13303296 - 13303478
Alignment:
| Q |
43 |
attctaatcaccttcctctaagtagttgaaaaaccctaattttaagatacaatctccacaaacaaactttcaattttgtcaataaccctaaaccctaaca |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13303296 |
attctaatcaccttcctctaagtagttgaaaaaccctaattttaagatacaatctccacaaacaaattttcaattttgtcaataaccctaaaccctaaca |
13303395 |
T |
|
| Q |
143 |
taaagggaagcttttgcacgctttgtcgagctaagaccaatgttgaacaaaatatacattatttgcggtacccgtaaagggtt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13303396 |
taaagggaagcttttgcacgctttgtcgagctaagaccaatgttgagcaaaatatacattatttgcggtacccgtaaagggtt |
13303478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University