View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12597_high_35 (Length: 235)

Name: NF12597_high_35
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12597_high_35
NF12597_high_35
[»] chr1 (17 HSPs)
chr1 (1-216)||(30367784-30367999)
chr1 (22-206)||(13007511-13007695)
chr1 (17-206)||(13069868-13070057)
chr1 (23-206)||(19727464-19727647)
chr1 (23-206)||(13101311-13101494)
chr1 (17-204)||(13214132-13214319)
chr1 (63-215)||(13064951-13065103)
chr1 (36-206)||(13204770-13204940)
chr1 (106-210)||(13244299-13244403)
chr1 (64-209)||(13161829-13161974)
chr1 (64-209)||(13094707-13094852)
chr1 (64-209)||(13130136-13130281)
chr1 (70-210)||(13271896-13272036)
chr1 (124-208)||(12963707-12963791)
chr1 (106-200)||(19278946-19279040)
chr1 (106-210)||(13080643-13080747)
chr1 (124-217)||(13086410-13086503)
[»] chr6 (1 HSPs)
chr6 (36-206)||(31396386-31396557)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30367784 - 30367999
Alignment:
Q  1 gatgaatcttatttcaacttagtaaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctcttt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30367784 gatgaatcttatttcaactttgtaaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctcttt 30367883  T
Q  101 tgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaa 200  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30367884 tgttagcaggtaatggcacacttagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaa 30367983  T
Q  201 agataattgtgtatca 216  Q
    ||||||||||||||||    
T  30367984 agataattgtgtatca 30367999  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 13007695 - 13007511
Alignment:
Q  22 gtaaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaa 121  Q
    ||||||||||| |||||||||||  ||||||| | |||| ||   ||||||||||||||||||||||  ||| |||| || |||||||| ||||||||||    
T  13007695 gtaaaagcacttatgaaggaaggagctggaaacgggggaatggacgagaagtatcttagagacaatgtcctcactctctttttagcaggaaatggcacaa 13007596  T
Q  122 taagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagataa 206  Q
    | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13007595 ttagttcaggtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagaaatcaaagataa 13007511  T

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Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 13069868 - 13070057
Alignment:
Q  17 acttagtaaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatgg 116  Q
    |||| ||||||||||||||||||||||  | |||||    |||| ||  ||||||||||||||||||||||||||||||||| || |||||||| |||||    
T  13069868 actttgtaaaagcactgatgaaggaagaatatggaacaaggggaatggatgagaagtatcttagagacaatgcactctctctctttttagcaggaaatgg 13069967  T
Q  117 cacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagataa 206  Q
    |||| | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  13069968 cacagttacttcaggtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagaaataaaagataa 13070057  T

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Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 19727647 - 19727464
Alignment:
Q  23 taaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaat 122  Q
    |||||||||| ||||||||||| |||||||| | || | ||| ||||||||||||||||||||||  |||| |||| || |||||||| |||||| || |    
T  19727647 taaaagcactaatgaaggaaggatctggaaagggggaaatgaatgagaagtatcttagagacaatttactcactctctttttagcaggaaatggcccagt 19727548  T
Q  123 aagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagataa 206  Q
     ||| || |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||    
T  19727547 tagtacaggtctcagttggtttttttggcttgtttcgactcatcctattgtcgaagccaaaattattcaagaaatcaaagataa 19727464  T

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Target: chr1; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 13101494 - 13101311
Alignment:
Q  23 taaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaat 122  Q
    |||||||||| | ||||||||| |||||||| | || | ||  ||||||||||||||||||||||| | || |||| || |||||||| |||||| || |    
T  13101494 taaaagcactaacgaaggaaggatctggaaagggggaaatggatgagaagtatcttagagacaatgtaatcactctctttttagcaggaaatggcccagt 13101395  T
Q  123 aagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagataa 206  Q
     ||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  13101394 tagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataa 13101311  T

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Target: chr1; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 13214319 - 13214132
Alignment:
Q  17 acttagtaaaagcactgatgaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatgg 116  Q
    |||| ||||||||||| ||||||||||| | |||||| | || | ||  ||||||||||||||||||||||||  || |||| || |||||||| |||||    
T  13214319 acttcgtaaaagcactaatgaaggaaggatttggaaagggggaaatggatgagaagtatcttagagacaatgcgatcactctctttttagcaggaaatgg 13214220  T
Q  117 cacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagat 204  Q
    | || |  ||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || ||||||    
T  13214219 cccagttcgttcaggtctcatttggtttttctggcttgtttcaactcatcttattgtggaagctaaaattattcaagaaataaaagat 13214132  T

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Target: chr1; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 13064951 - 13065103
Alignment:
Q  63 gagtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaact 162  Q
    ||||||||||||||||||||||| |||| ||  ||| |||||||| || || |||||| | |||||| ||||||||||||| || ||||||||||||  |    
T  13064951 gagtgagaagtatcttagagacactgcagtcaatctattgttagcgggaaacggcacagttagttcaggtctcagttggttcttttggcttgtttcatgt 13065050  T
Q  163 catcctattgtggaagccaaaattattcaagagatcaaagataattgtgtatc 215  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||| ||||    
T  13065051 catcctgttgtggaagccaagattattcaagagatgaaagataattgtctatc 13065103  T

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Target: chr1; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 206
Target Start/End: Complemental strand, 13204940 - 13204770
Alignment:
Q  36 gaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaataagttcaagtctc 135  Q
    ||||||||| | |||||| || | | |||||| ||||| |||||||||| || |||||||||| || |||||||| | |||  ||   |||||| ||||     
T  13204940 gaaggaaggatatggaaaggaagaaatgagtgggaagtttcttagagacgatacactctctctcttcttagcaggaagtggtccagctagttcaggtcta 13204841  T
Q  136 agttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagataa 206  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||    
T  13204840 agttggtttttttggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataa 13204770  T

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Target: chr1; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 13244299 - 13244403
Alignment:
Q  106 gcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagata 205  Q
    ||||| ||||| ||||| |||||| |||| |||||||| || ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  13244299 gcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattggggaagcgaaaattattcaagagatcaaagata 13244398  T
Q  206 attgt 210  Q
    |||||    
T  13244399 attgt 13244403  T

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Target: chr1; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 13161974 - 13161829
Alignment:
Q  64 agtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactc 163  Q
    |||||||||||||||||||| | ||||||| || |  |||| || || |||||  |||| ||||||  |||||||||||||||||||||  ||||||||     
T  13161974 agtgagaagtatcttagagatactgcactcactatggtgtttgccggaaatggttcaattagttcagctctcagttggtttttctggctcctttcaactt 13161875  T
Q  164 atcctattgtggaagccaaaattattcaagagatcaaagataattg 209  Q
    |||||||||||||||  ||||| |||||||||||||||||||||||    
T  13161874 atcctattgtggaagaaaaaatcattcaagagatcaaagataattg 13161829  T

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Target: chr1; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 13094852 - 13094707
Alignment:
Q  64 agtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactc 163  Q
    |||||||||||||||||||||| |||| |  || |  | || || || ||||| ||||| ||||||  |||||||||||||||||||||| ||||||||     
T  13094852 agtgagaagtatcttagagacactgcatttactatgatatttgccggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaactt 13094753  T
Q  164 atcctattgtggaagccaaaattattcaagagatcaaagataattg 209  Q
    |||||||||||||||  ||||| ||||||||||||| |||||||||    
T  13094752 atcctattgtggaagaaaaaatcattcaagagatcagagataattg 13094707  T

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Target: chr1; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 13130281 - 13130136
Alignment:
Q  64 agtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactc 163  Q
    |||||||||||||||||||| | |||| |  || | || || || || |||||  |||| ||||||  |||||||||||||||||||||| ||||||||     
T  13130281 agtgagaagtatcttagagatactgcatttactatgttttttgccggaaatggttcaattagttcagctctcagttggtttttctggcttctttcaactt 13130182  T
Q  164 atcctattgtggaagccaaaattattcaagagatcaaagataattg 209  Q
    |||||||||||||||  ||||| |||||||||||||||||||||||    
T  13130181 atcctattgtggaagaaaaaatcattcaagagatcaaagataattg 13130136  T

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Target: chr1; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 210
Target Start/End: Complemental strand, 13272036 - 13271896
Alignment:
Q  70 aagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatccta 169  Q
    |||||| ||||||||| |||| || |||| |||   ||||| ||||| ||| | |||||| |||| |||||||| || ||||||||||||||||||||||    
T  13272036 aagtatattagagacactgcattcactctcttggctgcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatccta 13271937  T
Q  170 ttgtggaagccaaaattattcaagagatcaaagataattgt 210  Q
     ||||||||| ||| |||||||||||||||||||| |||||    
T  13271936 atgtggaagcaaaacttattcaagagatcaaagatcattgt 13271896  T

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Target: chr1; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 12963707 - 12963791
Alignment:
Q  124 agttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagataatt 208  Q
    |||||| |||| |||||||| || |||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  12963707 agttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaaactaaaattattcaagagattaaagataatt 12963791  T

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Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 19278946 - 19279040
Alignment:
Q  106 gcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaa 200  Q
    ||||||||||| ||||| |||||  |||||| |||||| || ||||| || ||||||||||||||||| ||||| ||||||||||||||||||||    
T  19278946 gcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaa 19279040  T

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Target: chr1; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 13080643 - 13080747
Alignment:
Q  106 gcaggtaatggcacaataagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagata 205  Q
    ||||| ||||| ||||| ||| || |||||| ||||||||| ||||| |||||||| |||||||  || || |  |||||||||||||||||||||||||    
T  13080643 gcaggaaatggaacaattagtacaggtctcacttggtttttttggctggtttcaacgcatcctagggtagatggtaaaattattcaagagatcaaagata 13080742  T
Q  206 attgt 210  Q
    |||||    
T  13080743 attgt 13080747  T

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Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 217
Target Start/End: Complemental strand, 13086503 - 13086410
Alignment:
Q  124 agttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagataattgtgtatcac 217  Q
    |||||| |||| |||||||| |  ||||||||||||||||||   || |||||||| ||||| ||||||||||| |||||||||||| ||||||    
T  13086503 agttcaggtctaagttggttctcttggcttgtttcaactcatttcatagtggaagctaaaataattcaagagataaaagataattgtctatcac 13086410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 31396386 - 31396557
Alignment:
Q  36 gaaggaaggttctggaaatgagggagtgagtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacaataagttcaagtctc 135  Q
    ||||||||| ||||||||| | ||||||| ||| |||||||||||||||||||  |||||||||||||||||||| ||||||||||| ||||||||||||    
T  31396386 gaaggaaggatctggaaataatggagtgattgacaagtatcttagagacaatgtgctctctcttttgttagcaggaaatggcacaattagttcaagtctc 31396485  T
Q  136 agttggtttttctggcttg-tttcaactcatcctattgtggaagccaaaattattcaagagatcaaagataa 206  Q
     |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||  |||||||    
T  31396486 ggttggtttttctggcttgttttcaactcatcctaatgtggaagccaaaattattcaagagattcaagataa 31396557  T

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