View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_high_37 (Length: 222)
Name: NF12597_high_37
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 2089221 - 2089045
Alignment:
| Q |
28 |
gttgttgtaagagagtttggagaacccaagtcaagaagaatgccataatgatgtagagacttgcagaatactatatgatatagtgttgtgcaaatagctg |
127 |
Q |
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| T |
2089221 |
gttgttgtaagagagtttggagcacccaaactaagaagaatgccataatcatgtagacacttgcagaata---tatgatatagtgttgtgcaaatagctg |
2089125 |
T |
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| Q |
128 |
ttccccagaatgtgtgcacttcactgcaatcatggttgctaaagtggtgaacattttataaaagatttctgccaaatctt |
207 |
Q |
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| T |
2089124 |
ttccccagaatgtgtgcacttcactgctaccattgtggctaaagtggtgatcattttataaaatatttcggccaaatctt |
2089045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 28 - 207
Target Start/End: Original strand, 2073427 - 2073603
Alignment:
| Q |
28 |
gttgttgtaagagagtttggagaacccaagtcaagaagaatgccataatgatgtagagacttgcagaatactatatgatatagtgttgtgcaaatagctg |
127 |
Q |
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| T |
2073427 |
gttgttgtaagagagtttggagcacccaaactaagaagtatgccataatcatgtagacacttgcagaa---tatatgatatagtgttgtgtgaaaaactt |
2073523 |
T |
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| Q |
128 |
ttccccagaatgtgtgcacttcactgcaatcatggttgctaaagtggtgaacattttataaaagatttctgccaaatctt |
207 |
Q |
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| T |
2073524 |
ctccccaacatgtgtgcactttactgctaccattgctgctaaaatgatgaactttttataaaatatttcagccaaatctt |
2073603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 1559259 - 1559192
Alignment:
| Q |
140 |
tgtgcacttcactgcaatcatggttgctaaagtggtgaacattttataaaagatttctgccaaatctt |
207 |
Q |
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| T |
1559259 |
tgtgcacttcagtacaaccatggctgctaaagtggtgaacattttataaaagatttctgccaaatctt |
1559192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 2357039 - 2356972
Alignment:
| Q |
140 |
tgtgcacttcactgcaatcatggttgctaaagtggtgaacattttataaaagatttctgccaaatctt |
207 |
Q |
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| T |
2357039 |
tgtgcacttcattgcaaccatggctgctaaagtggtgaacattttatagaagatttcagccaaatctt |
2356972 |
T |
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