View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_high_40 (Length: 217)
Name: NF12597_high_40
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 48491812 - 48492023
Alignment:
| Q |
1 |
aataaatagggtaaattgtcccgtaaagattgggnnnnnnnnnnnnttggatacggtgaagcgaaggtgaaggcgtaaagagaaaccgaaaaggtgaagt |
100 |
Q |
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| T |
48491812 |
aataaatagggtaaatcgtcccgtaaagattgggaaaaaacaaaaaatggatacggtgaagcgaaggtgaaggcgtaaagagaaatcgaaaaggtgaagt |
48491911 |
T |
|
| Q |
101 |
aaccgataaagatggtgacgtgtcgaaaaggatataaatatcgtgcagtttcgtcattcatgnnnnnnngactcatagttgtacccgttagagcgggaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
48491912 |
aaccgataaagatggtgacgtgtcgaaaaggatataaatatcgtgcagtttcgtcattcaag--tttttgactcatagttgtacccgttagagcgggaac |
48492009 |
T |
|
| Q |
201 |
cccccaaatttcat |
214 |
Q |
| |
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|||||||||||||| |
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| T |
48492010 |
cccccaaatttcat |
48492023 |
T |
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