View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_high_42 (Length: 204)
Name: NF12597_high_42
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 40842224 - 40842407
Alignment:
| Q |
9 |
gagagatgaatttgggtaccttggaacttctcaatcgtgtggtatatgatttgaggggagagaagagaacttacatgcttaatgattttcaaattcaatt |
108 |
Q |
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|||| ||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
40842224 |
gagacatggatttgggtatcttagaacttctcaatcgtgtggtatatgatttgaggggagagaggagaacttacatgcttaatgcttttcaaattcaatt |
40842323 |
T |
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| Q |
109 |
tacggtgacttattcttctatgactttagctgatgcagtttttgtttctaattacaaaaaataagggaagttatgttgatagtg |
192 |
Q |
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| T |
40842324 |
tacggtgacttattcttctatgactctagctgatgcagtttttgtttctaattacaaaaaataagggaagttatgttgatagtg |
40842407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 41959040 - 41959225
Alignment:
| Q |
9 |
gagagatgaatttgggtaccttggaacttctcaatcgtgtggtatatgatttgaggggagagaagagaacttacatgcttaatgattttcaaattcaatt |
108 |
Q |
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|||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
41959040 |
gagacatgaatttgggtatcttgaaacttctcaatcgtgtggtatatgatttgaggggagagaggagaacttacatgcttaatgcttttcaaattcaatt |
41959139 |
T |
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| Q |
109 |
tacggtgacttattcttctatgactttagctgatgcag--tttttgtttctaattacaaaaaataagggaagttatgttgatagtg |
192 |
Q |
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| T |
41959140 |
tacggtgacttattcttctataactctagctgatgcagtttttttgtttctaattaccaaaaataagggaagttatgttgatagtg |
41959225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 29587107 - 29586924
Alignment:
| Q |
9 |
gagagatgaatttgggtaccttggaacttctcaatcgtgtggtatatgatttgaggggagagaagagaacttacatgcttaatgattttcaaattcaatt |
108 |
Q |
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|||| ||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| |
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| T |
29587107 |
gagacatgaatttgggtatcttgaaacttctcaatcgtgtgatatatgatttgaggggagagaggagaacttacatgcttaatgcttttccaattcaatt |
29587008 |
T |
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| Q |
109 |
tacggtgacttattcttctatgactttagctgatgcagtttttgtttctaattacaaaaaataagggaagttatgttgatagtg |
192 |
Q |
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|||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29587007 |
tacgacggcttattcttctatgactctagctgatgcagtttttgtttctaattaccaaaaataagggaagttatgttgatagtg |
29586924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 9992879 - 9992746
Alignment:
| Q |
14 |
atgaatttgggtaccttggaacttctcaatcgtgtggtatatgatttgaggggagagaagagaacttacatgcttaatgattttcaaattcaatttacgg |
113 |
Q |
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| T |
9992879 |
atgaatttgggtatcttgaaacttctcaaccgtgtggtatatgatttgagaggagagaggagaacttacatgcttaatgcttttcaaattcaatttacgg |
9992780 |
T |
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| Q |
114 |
tga----cttattcttctatgactttagctgatg |
143 |
Q |
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| T |
9992779 |
tgacttacttattcttctatgactctagttgatg |
9992746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 9992598 - 9992554
Alignment:
| Q |
148 |
ttttgtttctaattacaaaaaataagggaagttatgttgatagtg |
192 |
Q |
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| T |
9992598 |
ttttgtttctaattaccaaaaataagggaacttatgttgatagtg |
9992554 |
T |
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