View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_low_14 (Length: 348)
Name: NF12597_low_14
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 47782985 - 47782670
Alignment:
| Q |
18 |
ttccgaacctatgtataattcttctttattatggattaactgaccatttccgttgtttacttttatgctgagttcttatatacttccatttcgaaaacat |
117 |
Q |
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| T |
47782985 |
ttccgaacctatgtataattcttctttattatggattaactgaccatttccgttgtttacttttatgttgagttcttatatacttccatttcgaaaacat |
47782886 |
T |
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| Q |
118 |
aattcatctcattactacagggatgatcccaattagaaattaaactagcttttcattgtgaaggctatctcgcatttcatgcttaacaaactatgaagtc |
217 |
Q |
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| T |
47782885 |
aattcatctcattactacagggatgatcccaattagaaattaaactagcttttcattgtgaaggctatctcgcatttcatgcttaacaaactatgaagtc |
47782786 |
T |
|
| Q |
218 |
gatgtaggaaaat-aataaggaagtcataggagagagactattaagagttccacatacttcggtgataggaaatgtattcattgtggtgtcaccctgaaa |
316 |
Q |
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| T |
47782785 |
gatgtaggaaaataaaaaaggaagtcataggagagagactattaagagttccacatactttggtgataggaaatgtattcattgtggtgtcaccctgaaa |
47782686 |
T |
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| Q |
317 |
tggattctctcaagta |
332 |
Q |
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| T |
47782685 |
tggattctctcaagta |
47782670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 39382103 - 39382057
Alignment:
| Q |
104 |
catttcgaaaacataattcatctcattactacagggatgatcccaat |
150 |
Q |
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| T |
39382103 |
catttcgaaaacttaattcatccaattactacagggatgatcccaat |
39382057 |
T |
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