View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_low_16 (Length: 343)
Name: NF12597_low_16
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 6 - 331
Target Start/End: Complemental strand, 7230908 - 7230581
Alignment:
| Q |
6 |
atgtttgactagattaggcattaagtgttttaatgatgtttatcgtgcagtgtttacatattcaaattagttagcatgtgtgttaaagcagctagtcatc |
105 |
Q |
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| T |
7230908 |
atgtttgactagattatgcactaagtattttaatgatgtttatcgtgcagagtttacatattcaaattagttagcacgtatgttaaagcagctagtcatc |
7230809 |
T |
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| Q |
106 |
catggtcttagctttcctcaaagtgtcttgtgtgtcaagnnnnnnn--ctcgcgaaactctttttcatagtctttgaatggaatcatgaatcgattcatt |
203 |
Q |
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| T |
7230808 |
catggtcttagctttcctcaaagtgtcttgtgtgtcaagtttttttttctcgcgaaactctttttcaaagtctttgaatggaatcataaatcgattcatt |
7230709 |
T |
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| Q |
204 |
gacatcttctggtattgtttcttgttgttcatgacaacgtgaatcgtttcatgtacactatgatttgtatcatgttgactcaaatcaaaatattttgaaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
7230708 |
gacatcttctggtattgtttcttgttgttcatgacaacatgaatcgtttcatgtacactatgatttttatcatgttgactcgaatcaaaatattttgaaa |
7230609 |
T |
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| Q |
304 |
tcttctgaatcgattcgtttgtgttctc |
331 |
Q |
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| T |
7230608 |
tcttctgaatcgattcatttgtgttctc |
7230581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 27236600 - 27236660
Alignment:
| Q |
243 |
tgaatcgtttcatgtacactatgatttgtatcatgttgactcaaatcaaaatattttgaaa |
303 |
Q |
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| T |
27236600 |
tgaattgtttcatgtacaccatgatgcgtatcatattgattcaaatcaaaatattttgaaa |
27236660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 22916934 - 22916990
Alignment:
| Q |
88 |
ttaaagcagctagtcatccatggtcttagctttcctcaaagtgtcttgtgtgtcaag |
144 |
Q |
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|||||||| |||| |||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
22916934 |
ttaaagcatctagccatccatgatcttaagtttcttcaaagtgtcttgtgtgtcaag |
22916990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 8363076 - 8363134
Alignment:
| Q |
86 |
tgttaaagcagctagtcatccatggtcttagctttcctcaaagtgtcttgtgtgtcaag |
144 |
Q |
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| T |
8363076 |
tgttaaagcacctagcaatccatactcttagggttcctcaaagtgtcttgtgtgtcaag |
8363134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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