View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_low_17 (Length: 342)
Name: NF12597_low_17
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 42452848 - 42453170
Alignment:
| Q |
1 |
ggtcgcaccgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatact |
100 |
Q |
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| T |
42452848 |
ggtcgcaccgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatact |
42452947 |
T |
|
| Q |
101 |
cttggaaggtctatgatccatctacatttttcattatttctgtgtttgataatagtcaattacatgaagaatatatagctgctggagcaaacgatacaag |
200 |
Q |
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| T |
42452948 |
cttggaaggtctatgatccatctacatttttcattatttctgtgtttgataatagtcaattacatgaagaatatatagctgctggagcaaacgatacaag |
42453047 |
T |
|
| Q |
201 |
gatagggaaggtgagaatcagtctatcagaaatggaaatcaacaccgtttacaattattcttatcctcttgttcaacttcaaccttctgggctgaagaag |
300 |
Q |
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| T |
42453048 |
gatagggaaggtgagaatcagtctatcagaaatggaaatcaacaccgtttacaattattcttatcctcttgttcaacttcaaccttctgggctgaagaag |
42453147 |
T |
|
| Q |
301 |
atgggggaaattcaattgtcttt |
323 |
Q |
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||||||||||||||||||||||| |
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| T |
42453148 |
atgggggaaattcaattgtcttt |
42453170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 27253755 - 27253643
Alignment:
| Q |
7 |
accgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatactcttgga |
106 |
Q |
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| T |
27253755 |
accgacgcatattgtgtagctaagtatggttctaaatgggtgagaacaaggactattgttgatagtctttcaccaaggtggaatgagcaatatacttggg |
27253656 |
T |
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| Q |
107 |
aggtctatgatcc |
119 |
Q |
| |
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| || |||||||| |
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| T |
27253655 |
aagtttatgatcc |
27253643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 21197913 - 21197801
Alignment:
| Q |
7 |
accgatgcctattgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatactcttgga |
106 |
Q |
| |
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||||| || |||||||||||||| ||||| || |||||||| | |||| ||| ||||| ||| |||||| |||| ||||||||||||||| ||||| |
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| T |
21197913 |
accgacgcatattgtgtagctaagtatggttctaaatgggtgagaacaaggactattgttgatattctttcaccaaggtggaatgagcaatatacttggg |
21197814 |
T |
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| Q |
107 |
aggtctatgatcc |
119 |
Q |
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| || |||||||| |
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| T |
21197813 |
aagtttatgatcc |
21197801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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