View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12597_low_19 (Length: 333)

Name: NF12597_low_19
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12597_low_19
NF12597_low_19
[»] chr1 (1 HSPs)
chr1 (18-328)||(6378397-6378707)
[»] chr4 (4 HSPs)
chr4 (89-203)||(9933630-9933744)
chr4 (71-117)||(43158602-43158648)
chr4 (78-122)||(5136082-5136127)
chr4 (78-122)||(5138307-5138352)
[»] chr5 (3 HSPs)
chr5 (137-197)||(17135691-17135751)
chr5 (78-122)||(16544426-16544471)
chr5 (78-122)||(16546648-16546693)
[»] chr7 (2 HSPs)
chr7 (105-152)||(31656008-31656055)
chr7 (129-157)||(40365105-40365133)
[»] chr8 (2 HSPs)
chr8 (78-122)||(15290541-15290586)
chr8 (78-122)||(15470910-15470955)
[»] chr6 (4 HSPs)
chr6 (78-122)||(13153932-13153977)
chr6 (78-122)||(33342211-33342256)
chr6 (78-122)||(34164875-34164920)
chr6 (78-122)||(34167097-34167142)
[»] chr3 (10 HSPs)
chr3 (78-122)||(4598629-4598674)
chr3 (78-122)||(4600850-4600895)
chr3 (78-122)||(10056236-10056281)
chr3 (78-122)||(10058458-10058503)
chr3 (78-122)||(10060680-10060725)
chr3 (78-122)||(10062902-10062947)
chr3 (78-122)||(10065124-10065169)
chr3 (78-122)||(10067346-10067391)
chr3 (78-122)||(10209192-10209237)
chr3 (78-122)||(10211412-10211457)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 6378707 - 6378397
Alignment:
Q  18 agagcaactctctgatcaactacaaacgagtcttaacaagagatacacaatagttacgaaaaattagcttacaatgttcaacatgaacaaaccctaattt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6378707 agagcaactctctgatcaactacaaacgagtcttaacaagagatacacaatagttacaaaaaattagcttacaatgttcaacatgaacaaaccctaattt 6378608  T
Q  118 ctacctttcccctttctctcaagagagttacaaaaatgaccaataaattattcttaattgctcaacaagagcagtccctaatttcactctactcctcaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6378607 ctacctttcccctttctctcaagagagttacaaaaatgaccaataaattattcttaattgctcaacaagagcagtccctaatttcactctactcctcaat 6378508  T
Q  218 gataatcactgcccggtgtctagaatgtgtttctcaaccctagaaagtacaatctctcccaagatccaacaagagcaatccctaatttcactctacccct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6378507 gataatcactgcccggtgtctagaatgtgtttctcaaccctagaaagtacaatctctcccaagatccaacaagagcaatccctaatttcactctacccct 6378408  T
Q  318 cctttgcttct 328  Q
    | |||| ||||    
T  6378407 cttttggttct 6378397  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 9933630 - 9933744
Alignment:
Q  89 caatgttcaacatgaacaaaccctaatttctacctttcccctttctctcaagagagttacaaaaatgaccaataaattattcttaattgctcaacaagag 188  Q
    |||| ||||||| || | |||||||||||  ||  || ||||||||||||| |||||  ||||| | ||||| |||||||||||||| ||||| |||||     
T  9933630 caatattcaacaagacctaaccctaattttcacaatttccctttctctcaaaagagtagcaaaagttaccaagaaattattcttaatcgctcaccaagac 9933729  T
Q  189 cagtccctaatttca 203  Q
    || ||| ||||||||    
T  9933730 caatccataatttca 9933744  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 43158648 - 43158602
Alignment:
Q  71 ttacgaaaaattagcttacaatgttcaacatgaacaaaccctaattt 117  Q
    |||| |||||||||||| || ||||||||| ||||||||||||||||    
T  43158648 ttacaaaaaattagcttccagtgttcaacaagaacaaaccctaattt 43158602  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 5136127 - 5136082
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  5136127 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 5136082  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 5138352 - 5138307
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  5138352 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 5138307  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 17135751 - 17135691
Alignment:
Q  137 caagagagttacaaaaatgaccaataaattattcttaattgctcaacaagagcagtcccta 197  Q
    |||||||||||||||| ||||||| ||||||| || |||||||||  ||||||| ||||||    
T  17135751 caagagagttacaaaagtgaccaagaaattatcctcaattgctcacaaagagcaatcccta 17135691  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 16544471 - 16544426
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  16544471 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 16544426  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 16546693 - 16546648
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  16546693 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 16546648  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 31656008 - 31656055
Alignment:
Q  105 caaaccctaatttctacctttcccctttctctcaagagagttacaaaa 152  Q
    |||||| | ||||||||| || ||||||||||||||||||||||||||    
T  31656008 caaaccttgatttctaccatttccctttctctcaagagagttacaaaa 31656055  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 40365133 - 40365105
Alignment:
Q  129 ctttctctcaagagagttacaaaaatgac 157  Q
    |||||||||||||||||||||||||||||    
T  40365133 ctttctctcaagagagttacaaaaatgac 40365105  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 15290586 - 15290541
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  15290586 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 15290541  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 15470955 - 15470910
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  15470955 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 15470910  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 13153977 - 13153932
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  13153977 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 13153932  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 33342211 - 33342256
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  33342211 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 33342256  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 34164920 - 34164875
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  34164920 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 34164875  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 34167142 - 34167097
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  34167142 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 34167097  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 4598629 - 4598674
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  4598629 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 4598674  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 4600850 - 4600895
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  4600850 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 4600895  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 10056281 - 10056236
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  10056281 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 10056236  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 10058503 - 10058458
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  10058503 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 10058458  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 10060725 - 10060680
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  10060725 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 10060680  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 10062947 - 10062902
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  10062947 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 10062902  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 10065169 - 10065124
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  10065169 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 10065124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 10067391 - 10067346
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  10067391 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 10067346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 10209237 - 10209192
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  10209237 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 10209192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 10211457 - 10211412
Alignment:
Q  78 aaattagctt-acaatgttcaacatgaacaaaccctaatttctacc 122  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  10211457 aaattagcttgacaatgttcactatgaacaaaccctaatttctacc 10211412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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