View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12597_low_2 (Length: 723)
Name: NF12597_low_2
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 226 - 703
Target Start/End: Original strand, 33581281 - 33581782
Alignment:
| Q |
226 |
ctcatgtgaaaaaagtaaaagatgattttcaggcaggaaatgtaggtatagctgtatagg----tatacatgttttgatatttagtagtatgagaccaat |
321 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33581281 |
ctcatgtggaaaaagtaaaaggtgattttcaggcaggaaatgtaggtatagctgtataggtaggtatacatgttttgatatttagtagtatgagaccaat |
33581380 |
T |
|
| Q |
322 |
ggtacaaatatgtgaaaagagggaaaagcataaatggtataagatatggtaaaacaaaaacggcaaacatttcctttacagtttacacttggtgtgaaag |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33581381 |
ggtacaaatatgtgaaaagagggaaaagcataaatggtataagatatggtaaaacaaaaacggcaaacatttcctttacagtttacacttggtgtgaaag |
33581480 |
T |
|
| Q |
422 |
ttacaatttactactgttttt------------acacacacactggagcatacaactatcatttacaatctatagctct-cag---tagcagacctcagt |
505 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | | |||||||||||||| |
|
|
| T |
33581481 |
ttacaatttactactgtttttacacacacacacacacacacactagagcatacaactatcatttacaatctatagctctactgtgctagcagacctcagt |
33581580 |
T |
|
| Q |
506 |
taaaaagcgtggcagttatggttagttaa----tgtgtnnnnnnnnnnnnnnnnngattaggaagggacannnnnnnataaacgggagatgttagtattt |
601 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
33581581 |
taaaaagcgtggcagttatggttagttaatgtgtgtgtgtgagagagagagaggggattaggaagggacatttttttataaaagggcgatgttagtattt |
33581680 |
T |
|
| Q |
602 |
agttgttaggctagtatttttctccctcaccatggtttgaaccagctcctccaattccaacaagatgataacacttcaactcaaaacaagacggtatagc |
701 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33581681 |
agttgttaggctagtatttttctccctcaccatggtttgaaccaggtcctccaattccaacaagatgataacacttcaactcaaaacaagacggtatagc |
33581780 |
T |
|
| Q |
702 |
ct |
703 |
Q |
| |
|
|| |
|
|
| T |
33581781 |
ct |
33581782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 32356666 - 32356774
Alignment:
| Q |
181 |
tcatatattaaaaacctttgacatatatattatcagacatgaatactcatgtgaaaaaagtaaaagatgattttcaggcaggaaatgtaggtatagctgt |
280 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| || | ||||||||||| |||||| |
|
|
| T |
32356666 |
tcatatattgaacacctttgacatatatattatcagacacgaatactcatgtggaaaaagtaaaaggtgattttcaagctgaaaatgtaggtaaagctgt |
32356765 |
T |
|
| Q |
281 |
ataggtata |
289 |
Q |
| |
|
||||||||| |
|
|
| T |
32356766 |
ataggtata |
32356774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 33581216 - 33581273
Alignment:
| Q |
25 |
tatgtagtagaagcagcattagctagtaagatttagatgcaatgcagtcaaactgata |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
33581216 |
tatgtagtagaagcagcattagctagtaagatttgcatgcaatgcagtcaaattgata |
33581273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 32356583 - 32356621
Alignment:
| Q |
103 |
ataaataatttactattccaagcccagaatttatgaatt |
141 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32356583 |
ataaataatttactattccagacccagaatttatgaatt |
32356621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 324 - 430
Target Start/End: Original strand, 17969902 - 17970013
Alignment:
| Q |
324 |
tacaaatatgtgaaaagagggaaaagcataaatggtataagat----atggtaaaacaaaaacggcaaacatttcctttacagtttacact-tggtgtga |
418 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||| | | |||| |||||| ||||||||| |||||||| ||| |||| ||||| | |
|
|
| T |
17969902 |
tacaaatgtgtgaaaagagggaaaagcataaattatataagattttaagagaaaaaaaaaaacagcaaacattacctttacaattttcactcgggtgtaa |
17970001 |
T |
|
| Q |
419 |
aagttacaattt |
430 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17970002 |
aagttacaattt |
17970013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University