View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12597_low_21 (Length: 327)
Name: NF12597_low_21
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 48491654 - 48491364
Alignment:
| Q |
20 |
ttttaacgattttgtatgtataatgctgaatttgagtacagacatttgttaagttagaaatgacaagaaaacgtgaggaagaaatgatagttgaatatga |
119 |
Q |
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| T |
48491654 |
ttttaacgattttgtatgttta-tgctgaatttgagtacagacttttgttaatctaaaaatgaaaagaaaacctgagggagaaatgatagttgaacatga |
48491556 |
T |
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| Q |
120 |
gcacaaatattatggaaatattgtaaaatatattttagtctcttatttttgttctatgatttaatttaatattttctaaaccttgaatggacaccctaaa |
219 |
Q |
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||| |||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48491555 |
gcataaatattatgaaaatattgtaaaatatattttagtctcttatttttgaatcagcattcaatttaatattttctaaaccttgaatggacaccctaaa |
48491456 |
T |
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| Q |
220 |
taaatgtactttgatacaagcttaatctctgtcacaaatatgtgtttcaaaaatcaaattcgtactctttttctaagctaagtcatgttacc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48491455 |
taaatgtactttgatacaagcttaatctctgtcacaaatatgtgtttcaaaaatcaaattcgtactctttttctaagataagtcatgttacc |
48491364 |
T |
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