View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12597_low_23 (Length: 318)
Name: NF12597_low_23
Description: NF12597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12597_low_23 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 587139 - 586850
Alignment:
| Q |
20 |
agaaatattctggatcaaagtgatgcaaacgtacatatccatcttctcctccacttgataaccacaa--caaaaagattgtgtacgaccaatgaataaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
587139 |
agaaatattctggatcaaagtgatgcaaacgtacatatccatcttctcctccacttgataaccacaaaacaaaaagattgtgtaagaccaatgaataaag |
587040 |
T |
|
| Q |
118 |
agaaaacaattcaaagctaacttttattcaggactctatataatgagatgtctcataaatcaaatggagtactatggtattacctcacaacaacatatgg |
217 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
587039 |
agaaa-caattgaaagctaacttttattcaggactctatataatgagatgtctcataaatcaaatggagtactatggtattacctcacaacaacatatgg |
586941 |
T |
|
| Q |
218 |
tttgaaaccataatttaatcaccataagtgtgtcaaaattgaaggtgaacaattgctgaccactttgcacattccatagcttcactctctg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
586940 |
tttgaaaccataatttaatcaccataagtgtgtcaaaattgaaggtgaacaattgctgaccactttgcacattccatagcttcactgtctg |
586850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 36872967 - 36872911
Alignment:
| Q |
21 |
gaaatattctggatcaaagtgatgcaaacgtacatatccatcttctcctccacttga |
77 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36872967 |
gaaataatctgggtcaaagtgatgcaaacgtacatatccatcttctcctccacttga |
36872911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University